Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3866 ATGGGAAAAAAAGGTAAATGGCTCAAAAATTTCTTGACAGGGAAGAAGGACAAAGAAAAAGAGAAGGAAAAATGTAACACAAACCAGAATTTTTCAAATGGAACAGAAAATCCAACTACTCCTGTTTCAACAACACCCTCAAAGGAGAAGAAGAGATGGAGTTTTAGAAGATCATCAGCAACAGCTACACCAACAGCTTCCAAGGAATTGAATAATTCTGAAATTACTGCTTCAATGACAGTGCAAAGTACTGTCATTGATATTCAGAATGAGCAAAGGAATCATGCCATTGCTGTGGCTGCTGCTACAGCCGCGGCAGCTGATGCAGCAGTGGCAGCTGCACAAGCTGCAGCTGCTGTGATCCGGTTAACTTCTGGTTCAAATGAAACATCTAAAAGTATTGAAGATGCTGCTGCTGTTAAAATTCAATGTGTCTTTCGATCTCACTTGGCAAGAAAGGCATTGCGTGCTTTAAGAGGATTGGTGAAGTTGCAGGCACTGATAAGGGGTCACTTGGTGAGAAAACAAGCAAAGGCAACACTCAGATGTATGCAGGCTCTGGTCACAGCACAAGCTAGAGCTCGTGCTCAAAGGATCCGAATGGTGTCAGAAGGAAAGCCTCATCTAAATCACAGAAATGCTATGGAAAATGACTTGTTCAGGCAAATATATAATGAAATGGACAGAGGCTTGGAAGACAACATCAAAATTGTGGAGATGGATTTTTGTGAATCAAAAGGCAACTCTACAAGCAGAAGCAGCAGTGTAAATAGACAACATTATGAGCAATCTGAAAATAGATATTCCATAAATGGTTCCTATACGAAAGAAGAAAACTACAAAGTATCACCAGCTCCATCAGCTTTAACAGAATTGAGTCCAAAAGCATGCAGTGGCCATTTTGAGGATTGCTTCAGTACAGCTCAAAGCAGTCCTCAATGCTATTCTGCTATATCAAAAACAGATGAATCAAATCACCCTTTTGCTTTCCCTAGGCCATCTTATGCAGAACAAATGTCCTATGACTACCCTTTGTATCCAAGTTACATGGCTAATACAGAATCATCAAGAGCTAAAGTTAGATCACAAAGTGCACCAAAACAAAGGCCTGATTCATTTGAGAGGCAACTGAGTCGGCGGAGAATTTCGGTTGAAGGAAGAAATGTTCCTAGGCCAGTGAGGATGCAGAGGTCATCTTCACAAGTAGGTGCAGCTGCTCAGAACTACCAATATCCATGGTCAATTAAGCTTGACAGATCGGCGGTTTCACTCAAAGACAGCGAGTGTGGTTCGACAAGTACAATGCTCACAAACACTAATTACTGCAGATCCCTTGTTGCATATGATCCAGAGGGAGATAGGTACTGA 1368 0.4152 MGKKGKWLKNFLTGKKDKEKEKEKCNTNQNFSNGTENPTTPVSTTPSKEKKRWSFRRSSATATPTASKELNNSEITASMTVQSTVIDIQNEQRNHAIAVAAATAAAADAAVAAAQAAAAVIRLTSGSNETSKSIEDAAAVKIQCVFRSHLARKALRALRGLVKLQALIRGHLVRKQAKATLRCMQALVTAQARARAQRIRMVSEGKPHLNHRNAMENDLFRQIYNEMDRGLEDNIKIVEMDFCESKGNSTSRSSSVNRQHYEQSENRYSINGSYTKEENYKVSPAPSALTELSPKACSGHFEDCFSTAQSSPQCYSAISKTDESNHPFAFPRPSYAEQMSYDYPLYPSYMANTESSRAKVRSQSAPKQRPDSFERQLSRRRISVEGRNVPRPVRMQRSSSQVGAAAQNYQYPWSIKLDRSAVSLKDSECGSTSTMLTNTNYCRSLVAYDPEGDRY* 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3866 455 MobiDBLite consensus disorder prediction 372 387 - -
Mtr1g3866 455 Pfam IQ calmodulin-binding motif 137 156 IPR000048 GO:0005515
Mtr1g3866 455 Pfam IQ calmodulin-binding motif 162 178 IPR000048 GO:0005515
Mtr1g3866 455 ProSiteProfiles IQ motif profile. 135 163 IPR000048 GO:0005515
Mtr1g3866 455 MobiDBLite consensus disorder prediction 246 265 - -
Mtr1g3866 455 Gene3D - 135 186 - -
Mtr1g3866 455 MobiDBLite consensus disorder prediction 57 71 - -
Mtr1g3866 455 MobiDBLite consensus disorder prediction 27 48 - -
Mtr1g3866 455 MobiDBLite consensus disorder prediction 357 401 - -
Mtr1g3866 455 SMART iq_5 157 178 IPR000048 GO:0005515
Mtr1g3866 455 SMART iq_5 134 156 IPR000048 GO:0005515
Mtr1g3866 455 MobiDBLite consensus disorder prediction 10 26 - -
Mtr1g3866 455 PANTHER IQ-DOMAIN 5-RELATED 1 432 - -
Mtr1g3866 455 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 1 432 - -
Mtr1g3866 455 ProSiteProfiles IQ motif profile. 159 186 IPR000048 GO:0005515
Mtr1g3866 455 MobiDBLite consensus disorder prediction 357 371 - -
Mtr1g3866 455 MobiDBLite consensus disorder prediction 1 71 - -
Mtr1g3866 455 Pfam Protein of unknown function (DUF4005) 311 388 IPR025064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3866 Mtr-Chr1 50292149 50294970 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3866 1 451 IQD Protein Family AT4G14750 44.211 4.58e-105 318
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3866 - - gmx:100817667 629.787