Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3865 ATGGCTGGTAGGCTACCTGGTGTTGGATTGTCACCAAGGAAAAGATCAGAACATTATCACAACAGACATGAACATTATGCTACCTACAGAGACTCTTACCTAAAGGAATCATTGGATGCACCATGGACTTCAATGACTACTACCTTAGATGAAACTGCTTTCAAAGCCAAACAACGCCTACAGAAGAAACTTGGTCACTTCTTTTCCTCTTCAAGGTCAAGTGAACACAATCCCAAAAAAGAAGGAAAAGAATTCCAAAAGAAAGATGCAGGATTAGGTAGGAAGTTACTAGAAAGTTCATGGTTATTACGTGGCAACAAATTTAAGAAAGAGAGAAAAATTTGTGCTGTGTGCTTAGAAGATTTTCAGCAGGATGAAGAGGTTATGAATCTTTCTTGCTCACATAAGTATCATTCAGCATGTCTTCTCCCTTGGCTTGAAACACATCCTCATTGTCCTTATTGTAGAACTATTGTTGAGCCTTGA 486 0.3868 MAGRLPGVGLSPRKRSEHYHNRHEHYATYRDSYLKESLDAPWTSMTTTLDETAFKAKQRLQKKLGHFFSSSRSSEHNPKKEGKEFQKKDAGLGRKLLESSWLLRGNKFKKERKICAVCLEDFQQDEEVMNLSCSHKYHSACLLPWLETHPHCPYCRTIVEP* 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3865 161 Pfam Ring finger domain 114 156 IPR001841 -
Mtr1g3865 161 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 36 157 - -
Mtr1g3865 161 SMART ring_2 115 155 IPR001841 -
Mtr1g3865 161 ProSiteProfiles Zinc finger RING-type profile. 115 156 IPR001841 -
Mtr1g3865 161 MobiDBLite consensus disorder prediction 66 88 - -
Mtr1g3865 161 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 99 160 IPR013083 -
Mtr1g3865 161 CDD RING-H2_PA-TM-RING 115 156 - -
Mtr1g3865 161 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 36 157 - -
Mtr1g3865 161 SUPERFAMILY RING/U-box 114 159 - -
Mtr1g3865 161 MobiDBLite consensus disorder prediction 73 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3865 Mtr-Chr1 50279093 50280577 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3865 109 159 C3H Transcription Factor Family AT3G58720 45.098 1.42e-12 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3865 - - gmx:100527548 238.039