Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3857 ATGAATATGAATCCTCATCATGGTGGAATGAAGGAGGAATTTGTAGGAGGAAGTTCTTCCTTTTCTGTGGTTGGTGAACCTCAACCAAGGGAAGGACTTCATGAAAATGGTCCTCCACCATTCCTCACAAAAACATATGATATAGTTGATGATCCTTCCACAAATCATATAGTTTCATGGAGTACAGGGAACAATAGCTTTGTTGTTTGGGATCCTCAAGCCTTTTCCATTATTCTTCTCCCTAGATTCTTCAAGCACAACAATTTCTCCAGTTTTGTCAGGCAACTTAATACCTATGGGTTTAAAAAGGTTGATGCAGATAGGTGGGAATTTGCTAATGAGATGTTTCTAAAAGGACAAAAAATCCTTTTGAAGAACATTAGAAGAAGAAAAGCAAATCAATCTCAAGTAATGCAAGCACTAGACCCGTCATGTGTTGAGCTGGGAAGGTTTGGATCAGACGGAATCGAAGTGGATCGGTTGAGGCGCGACAGACAAGTTCTAATGGTTGAGTTGGTGAAACTTAGACAACAACAACAGAATACTAGAACTCACCTTGAAGCAATGGAAGGAAGGCTTAAAAGAAGTGAACAAAAACAAAAACAGATGATGAATTTCTTGGCAAGGGCAATACAAAATCCTAATTTCTTGCAACAGTTAGTTCAGCAGAAGGAATGGAGAAAAGAGTTAGAGGAAATTTTTTCTAAGAAGAGAAGGAGAACTATTGATCAAGGGCCTAGTAATGTTGAAGCAGGTGATGAATTAGGATATGTTGATAAAGAGTGCTTAAATTTTGTCAAACTCGAAACACATCAAGATGTTGAGGAAGATTCCAATCAAATCAATCAACTTGAAGTAAGAGATAAAGAGATCGATATTGAAGTGTTTTGGCAAGATTTGTTTAAAGAGGGTATTGAAGATGAAGTGGATATTGAAGATGTTGATGTATTGGCTGAGCAACTTGGTTATCTTGCCTCTAGTCCTCCTAAATAG 993 0.3766 MNMNPHHGGMKEEFVGGSSSFSVVGEPQPREGLHENGPPPFLTKTYDIVDDPSTNHIVSWSTGNNSFVVWDPQAFSIILLPRFFKHNNFSSFVRQLNTYGFKKVDADRWEFANEMFLKGQKILLKNIRRRKANQSQVMQALDPSCVELGRFGSDGIEVDRLRRDRQVLMVELVKLRQQQQNTRTHLEAMEGRLKRSEQKQKQMMNFLARAIQNPNFLQQLVQQKEWRKELEEIFSKKRRRTIDQGPSNVEAGDELGYVDKECLNFVKLETHQDVEEDSNQINQLEVRDKEIDIEVFWQDLFKEGIEDEVDIEDVDVLAEQLGYLASSPPK* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3857 330 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 20 276 IPR027725 -
Mtr1g3857 330 Coils Coil 158 178 - -
Mtr1g3857 330 PRINTS Heat shock factor (HSF) domain signature 41 64 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mtr1g3857 330 PRINTS Heat shock factor (HSF) domain signature 79 91 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mtr1g3857 330 PRINTS Heat shock factor (HSF) domain signature 92 104 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mtr1g3857 330 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-6B 20 276 - -
Mtr1g3857 330 SMART hsfneu3 37 130 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mtr1g3857 330 Gene3D - 33 131 IPR036388 -
Mtr1g3857 330 MobiDBLite consensus disorder prediction 1 38 - -
Mtr1g3857 330 SUPERFAMILY "Winged helix" DNA-binding domain 36 130 IPR036390 -
Mtr1g3857 330 Pfam HSF-type DNA-binding 41 130 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mtr1g3857 330 ProSitePatterns HSF-type DNA-binding domain signature. 80 104 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3857 Mtr-Chr1 50149113 50151327 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3857 22 327 HSF AT3G22830 54.294 2.41e-123 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Mtr1g3857 HSF_DNA-bind 5.1e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3857 K09419 - gmx:100809515 429.483