Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3847 ATGAAGGAAAAGAGCGAATGCTTCGAGTGTCTTCAACTCAGAATCAACTCAGATTTCTCCGATCAACTCGTCTTCAATTATGCAATCTCCAACTCCCCTTTTCCTTTCGGATCCTCTGCTATTCTCCATATTACTAGTTCAGAAGATGGGGAAGCTCCAAGTGGTCAATTCATATTGCAGTACATGTCTAGCCATCACAACAACTGTTTTACCAATTATGTAAATCAATATATCTTGGATAGTAATGAAAACACCAAGAGTGATGATCTTGATGTCAGTCATGGTGGAAATGGATTTACGACTTGTAATCATTCTGGAAGGTTTTCTTGCTCGAGGACAATTTCTGGAATTGCACCGATTGCTTGTGTCGGAAAGTCTTCATATTCTATACTTCAACAGGTTGCCAATGATTTCTTGTCCGGGTTAACTGAAGATCATGTATTAAAATCACTTGATCTCTTCGTTGAAGGGAAAGCATCTGGACGAGACAGTACGAATTTCCTTAGTTTAATTGGGTTTCCGTCATTTGAAGAAAATAATTTTCCTGGCTCTTTGAGGCATCCAAACATAGCTCCTGTACTTGCAATTTTGAAAACATCTGGTTACACTAACATGGTGCTTCCAAAGACTCAATACAACTTAGAAAGTATTCTTCATTTCAACCCCAACGCCTTAAAGTCTGATTGGCATAGAAGGTTTCTTATATATCAGCTACTATCCGCCTTATTGTACTTGCATGGTTTAGGGGTTTCCCATGGTAATATATGTCCGTCCAATATCATGTTGACTGACTCGTTATGGTCTTGGCTTAGATTATGGAATGAACCTGTACTGGAATCTAAATTAACTTTGCAAGAGAGTGAAAGTGTAAAATCAAAACCTGCAAAAATAGGTTGTTGTAATGATGGTTGTCATTCGAATGATCTTTATGCTGATCTAAAGCTTTCTCCATTAATTGATTGGCATTCTAGCTTTCATCAGTGGTGGAAAGGAGAACTAAGTAATTTTGAGTATTTACTCATCTTAAACAGATTAGCAGGAAGGAGGTGGGGGGACCATACATTTCATCCAGTAATGCCTTGGGTTGTTGATTTTAGCTCAAAACCAGATGATAATTGTGATGTAGGGTGGCGAGACTTAAGCAAGAGCAAATGGCGCTTGGCAAAAGGTGATGAACAGTTGGATTTCACCTATTCAACATCTGAAATCCCTCATCATGTATCAGATGAATGTCTGTCTGAACTGGCTGTCTGCAGCTATAAAGCAAGAAGGTTGCCTCTAAGTGTTCTTCGAATGGCTGTTCGTTCAGTGTATGAACCTAATGAATATCCTTCCTCAATGCAGAGACTCTATCAATGGACGCCTGATGAATGCATTCCAGAGTTTTATTGTGACCCCCAAATTTTTAGCTCAGTACATGATGGTATGGCTGATTTGGCTACACCTTCTTGGGCAGAGAGCCCTGAGGATTTCATTAAATTGCATCGTGATGCATTGGAAAGTAATAGGGTGTCGTTTCAACTACATCACTGGATAGATATAATCTTTGGGTACAAAATGTCTGGCGAGGCCGCAATTGTTGCCAAGAATGTTATGCTTACTCAATCAGAATCCACAATGCCAAGATCAACAGGACGTCGTCAGCTCTTTATGCGGCCACACCCTATTCGCCACGCCACTGCAAAAATAACACGTAATGGGTCTAATAAATATGCCAAAGTTTTGACCCAAACAAATGAAATGCAGCGAGAGACATCTCTTCTATCTGAAACTGCGTATCTACAAGAATTGGAACAAGCATCTGCATTTTCGGAACATGCTAGGCATTTGAATGCTTGCTACCGTTACCCATTAAATCAAATGAAAAGGAAGAACATCTCATCCCTGGGAGATCCAACCACAGGGACATTCACTAAAAATATAAGCGATGTATCTTTCATTGACAAAAATTATCGGCTGCCGAATAAAATGAACCATATATCTTTTCTTCAACATATGAAAGAGGAAGATGAAGGCTTTTCAGGATATCCAGACTTGCTTCTCTGGAGGCAGAAATTGTCTTCTTCAAGACTTGCCTCTGAAGATATTGCAAGGGACATATTTTCTGTCGGCTGTCTCTTGGCAGAACTTCATCTTTGCAGACCGCTATTTGATTCAATCTCATTGGAAATATACTTGGAGGATGGAACATTACCAGGATTTCTGCAGGAACTACCTCCTCATGTTAGAATACTTGTTGAAGCATGCATCCAAAAGGATTGGATGAGGAGGCCATCGGCCAAAATTCTTCTGGATTCACCTTATTTTCCGAAAACAATCAAGTCCTCCTACTTGTTTCTTGCTCCACTTCAGCTTGTTGCTAAAGATGAATCTCGTCTTCATTTTGCTGCAAATCTTGCAAAGCAGGGAGCTCTCAGGCAAATGGGTACATTTGCAACTGAAATGTGTGCTACTTACTGCTTACCACTTATAGTGAATGTTGCGAGTGATACTGAAGCTGAATGGGCGTACATACTACTAAAGGAATTGATGAAATGCTTAACAGCACAAACAGTGAAAATATTAATATTGCCAACCATACAGAAAATTTTACAGAACACAGGTTATTTACATTTGAAGGTTTCCCTTTTACAAGATTCATTTGTGCGCGAAATATGGAACCGAGTTGGCAAACAGGCATACCTGGAAACTATTCACCCGTTGGTCTTATCAAACTTGTATATTTCTCCGGATAAAAATTCAGCTGCATCTGCTTCGGTGCTACTAATTGGTTCTAGTGAGGAGATTGGTGTACCAATTACCATAAATCAGACTATTTTGCCCCTTGTTCACTGCTTTGGGAAAGGACTATGTGTAGATGGCATTGATGTGCTGGTCAGAATTGGGGGTATTTTTGGGGAATCCTTTATTGTTAAACAGATGCTACCATTACTGAAAAATGTTGTCCGATCATTCATTGACGTGTCATTCGTGAATAAGCCTGATCCTGTCCAGAGTTGGAGTTCTTTAGCACTTATTGATTGTATGATGACTTTAGATGGCCTTGTAGCTTTCTTGACAGAAGAAGTCATTGTAAAGGAGCTGCTTGAAGACATAAGTTGCATACACGTTGGGGTTCTTATGCAGAAACATATGGAAATTACTGTGCTTCAGGTTGCTGCTAATACTCTCTTTGGAATTTGTCAGCGGATTGGAGCAGATTTGACGGCATTGCATATTCTTCCAAAACTTAAAGAACTGTTTGATGAGCTTGCTTTCTCCCAGGAAATTTCTAAAGGTTCGACTGCTGTCAGCAGAAACTCGAAGGTTACCAAATTAAAAATTGGAGGGGACTTCCAAATTGAGAGTCGCATGGATCTAGTGTTGCTTCTCTATACCTTGTTTGCATCTCTTCTTGGGATAGAGAAACTTCGTCAATGTTGTGCTACATGGTTACTTCTTGAACAACTACTTCTACGCCGTCATAACTGGAAGTGGGAATATGCAGGAGAATCATCAAGAAATAGCTCAGAAAGTAACATTGCTAAAAGACCTGCAATTGCCCAGGGATTCACATCTGAATACAATCCAGCAAAGTTGTTGCTTAATGGGGTTGGATGGTCAATTCCACAATCCCAGGGAAGTAGAGGTGCCAAAAATTTGATTCAGAGAAGACCATTTAAAGTTCATCAAAGCCTAGTAGTAATGCAAGAAGGAATGTCAAACCAAGTGAACCATGAACCATGGTTTTGGTTCCCTAGTCCAGCCACCAACTGGGATGGGCCTGCATTTCTTGGGCGGGTGGGAATTCAAAAAGATGACCTTCCATGGAAAATCAGAGCATCTGTAAGCTACTCTATACGTGCCCATCATGGAGCGGTGAGGTCTCTGGCTGTTCATCAGGATGAATCTACCGTTTATACTGCGGGAATTGGCCAAGGATATAAAGGAACTGTTATGAAGTGGGAATTGAGCCGAACTAACTGTCTGTCCGGCTATTATGGCCATGAGGAGGTTGTAAACGATATTTGTATTTTATCATCTAGTGGAAGAGTGGCATCTTGTGACGGAACAATTCATATTTGGGATAGTCAAACAGGGAAGCAAATATCAGTATTTGCGGAGTCCGAAACGGAATCTGGCCATCCCACAAACCACTCAGCATCTGTGCCAAAAATTACCAGTGACCAGGCAAATGTCCTTAATTTGAATACTCTGTCAAATGGGATGCTGTCTAGTGCTTTTGATTCAAGCCTTTATACTTGTATGCATCTGTTAGACTCTGCTGAAACACTTGTAGTTGGCACTGGAAATGGTTCTCTCAGGTTCATTGATGTTGCTCGAGGTCAAAAGCTTCATATCTGGAGGGGGGAATCTAATGAATCTAGTTTTCATTCACTTATTTCTGCTGTATGTTCCTCTGGTTCTAGCAAGGCGCAGGCAGGTGGAATTTCCACCTCACCGTCTTTAATTGCAACTGGACAAAGTTCTGGTCACTGTAAATTGTTTGATGCAAAGAGTGGAAATGTCGTTGCTTCTTGGCGTGCTCATGATGGATATGTAACAAAGTTGGCATCACCTGAGGAACATCTGCTTATTTCCAGCTCTCTGGACAGAACTTTACGAGTCTGGGACTTGAGAATGAATTTGCCATCACAGCCCATTATTTTCAGAGGTCATTCAGATGGAATATCCAGTTTCTCCATTTGGGGCCAAGATGTTATTTCAATTTCCCGGAATAGGATTGGGCTTCTTTCCTTGTCTAAATCTGCCATTGAAACGGATGGGCAGCATCAGATTATCCCCCAGAAACTCTATGTTTCTTCAGATAACGGAATGAGAAGCTTGTCAGCGTTATCAAGTATCAGTATACTTCCTTTCTCTCGATTGTTTCTTATTGGAACAGAAGATGGTTATTTGAGAATTTGTTGTTAA 4914 0.4058 MKEKSECFECLQLRINSDFSDQLVFNYAISNSPFPFGSSAILHITSSEDGEAPSGQFILQYMSSHHNNCFTNYVNQYILDSNENTKSDDLDVSHGGNGFTTCNHSGRFSCSRTISGIAPIACVGKSSYSILQQVANDFLSGLTEDHVLKSLDLFVEGKASGRDSTNFLSLIGFPSFEENNFPGSLRHPNIAPVLAILKTSGYTNMVLPKTQYNLESILHFNPNALKSDWHRRFLIYQLLSALLYLHGLGVSHGNICPSNIMLTDSLWSWLRLWNEPVLESKLTLQESESVKSKPAKIGCCNDGCHSNDLYADLKLSPLIDWHSSFHQWWKGELSNFEYLLILNRLAGRRWGDHTFHPVMPWVVDFSSKPDDNCDVGWRDLSKSKWRLAKGDEQLDFTYSTSEIPHHVSDECLSELAVCSYKARRLPLSVLRMAVRSVYEPNEYPSSMQRLYQWTPDECIPEFYCDPQIFSSVHDGMADLATPSWAESPEDFIKLHRDALESNRVSFQLHHWIDIIFGYKMSGEAAIVAKNVMLTQSESTMPRSTGRRQLFMRPHPIRHATAKITRNGSNKYAKVLTQTNEMQRETSLLSETAYLQELEQASAFSEHARHLNACYRYPLNQMKRKNISSLGDPTTGTFTKNISDVSFIDKNYRLPNKMNHISFLQHMKEEDEGFSGYPDLLLWRQKLSSSRLASEDIARDIFSVGCLLAELHLCRPLFDSISLEIYLEDGTLPGFLQELPPHVRILVEACIQKDWMRRPSAKILLDSPYFPKTIKSSYLFLAPLQLVAKDESRLHFAANLAKQGALRQMGTFATEMCATYCLPLIVNVASDTEAEWAYILLKELMKCLTAQTVKILILPTIQKILQNTGYLHLKVSLLQDSFVREIWNRVGKQAYLETIHPLVLSNLYISPDKNSAASASVLLIGSSEEIGVPITINQTILPLVHCFGKGLCVDGIDVLVRIGGIFGESFIVKQMLPLLKNVVRSFIDVSFVNKPDPVQSWSSLALIDCMMTLDGLVAFLTEEVIVKELLEDISCIHVGVLMQKHMEITVLQVAANTLFGICQRIGADLTALHILPKLKELFDELAFSQEISKGSTAVSRNSKVTKLKIGGDFQIESRMDLVLLLYTLFASLLGIEKLRQCCATWLLLEQLLLRRHNWKWEYAGESSRNSSESNIAKRPAIAQGFTSEYNPAKLLLNGVGWSIPQSQGSRGAKNLIQRRPFKVHQSLVVMQEGMSNQVNHEPWFWFPSPATNWDGPAFLGRVGIQKDDLPWKIRASVSYSIRAHHGAVRSLAVHQDESTVYTAGIGQGYKGTVMKWELSRTNCLSGYYGHEEVVNDICILSSSGRVASCDGTIHIWDSQTGKQISVFAESETESGHPTNHSASVPKITSDQANVLNLNTLSNGMLSSAFDSSLYTCMHLLDSAETLVVGTGNGSLRFIDVARGQKLHIWRGESNESSFHSLISAVCSSGSSKAQAGGISTSPSLIATGQSSGHCKLFDAKSGNVVASWRAHDGYVTKLASPEEHLLISSSLDRTLRVWDLRMNLPSQPIIFRGHSDGISSFSIWGQDVISISRNRIGLLSLSKSAIETDGQHQIIPQKLYVSSDNGMRSLSALSSISILPFSRLFLIGTEDGYLRICC* 1638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3847 1637 Gene3D Transferase(Phosphotransferase) domain 1 177 297 - -
Mtr1g3847 1637 Gene3D - 1271 1470 IPR015943 GO:0005515
Mtr1g3847 1637 Gene3D - 1471 1637 IPR015943 GO:0005515
Mtr1g3847 1637 SUPERFAMILY BEACH domain 312 557 IPR036372 -
Mtr1g3847 1637 Pfam WD domain, G-beta repeat 1502 1538 IPR001680 GO:0005515
Mtr1g3847 1637 Pfam WD domain, G-beta repeat 1321 1356 IPR001680 GO:0005515
Mtr1g3847 1637 Gene3D Transferase(Phosphotransferase) domain 1 684 777 - -
Mtr1g3847 1637 Pfam Beige/BEACH domain 327 537 IPR000409 -
Mtr1g3847 1637 Gene3D BEACH domain 317 581 IPR036372 -
Mtr1g3847 1637 CDD Beach 327 557 IPR000409 -
Mtr1g3847 1637 ProSitePatterns Trp-Asp (WD) repeats signature. 1525 1539 IPR019775 -
Mtr1g3847 1637 ProSiteProfiles Trp-Asp (WD) repeats profile. 1507 1540 IPR001680 GO:0005515
Mtr1g3847 1637 SUPERFAMILY Protein kinase-like (PK-like) 695 792 IPR011009 -
Mtr1g3847 1637 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1507 1540 - -
Mtr1g3847 1637 SMART WD40_4 1401 1438 IPR001680 GO:0005515
Mtr1g3847 1637 SMART WD40_4 1500 1538 IPR001680 GO:0005515
Mtr1g3847 1637 SMART WD40_4 1602 1637 IPR001680 GO:0005515
Mtr1g3847 1637 SMART WD40_4 1441 1497 IPR001680 GO:0005515
Mtr1g3847 1637 SMART WD40_4 1319 1356 IPR001680 GO:0005515
Mtr1g3847 1637 SMART WD40_4 1273 1316 IPR001680 GO:0005515
Mtr1g3847 1637 CDD PKc 184 265 - -
Mtr1g3847 1637 SUPERFAMILY Protein kinase-like (PK-like) 183 267 IPR011009 -
Mtr1g3847 1637 SMART Beach_2 325 557 IPR000409 -
Mtr1g3847 1637 SUPERFAMILY WD40 repeat-like 1277 1635 IPR036322 GO:0005515
Mtr1g3847 1637 PANTHER GH12955P 1 1637 - -
Mtr1g3847 1637 ProSiteProfiles BEACH domain profile. 313 583 IPR000409 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3847 Mtr-Chr1 50076826 50085475 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3847 1282 1539 Miscellaneous Gene Families AT5G08390 22.989 7.09e-08 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDKL-Cr Mtr1g3847 Beach 3.7e-45 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3847 K17601 - gmx:100809116 2751.85