Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3843 ATGCCAGTGATGCAATTGAAAGAAAGCTCAGAGCAACACATTGTGATCAAAACCAATTTGCAGAATCCTAAGAATACACCAAAGGCTTCTTCTCAAAATGGAAAAGCTCCACCACCAACTTCCATACAAAACAATAACCAAACTTCACCACCTCAACCAAGGAACAAAGGAAGAAGAAGGGGAAGAGGTGGTAGAAAATCTGATCAAGGAGAAATTTTGACGAGACCCAGTTCAAGACCATGTACTGAAATAACAAGTGCTATAAATGGAAATGTTGAAAATGGTTACAACTCTGGTGACATTGATGTTGGTTTTCCTACTTCAAGCAAGTCTATGAACTTTACTCGTAGACCTGGATTTGGACAAGTTGGGACAAAATGTATTGTGAAGGCTAACCACTTCTTTGCAGAGTTACCAGACAAGGACTTAAACCAATATGATGTTACTATTACCCCTGAGGTGTCTTCAAGAACAGTAAACAGGTCCATTATAGCTGAACTTGTAAGGTTGTATAAAGAGTCTGATTTAGGGATGAGGCTCCCAGCTTATGATGGCAGAAAAAGTCTGTATACTGCAGGACAGCTACCCTTTTCCTGGAAAGATTTTACGATTAAGCTTGTAGATGAAGAGGATGCAGTTAATTGCCCCAAAAGGGTAAAAGAGTACAGGGTGGTGATCAAGTTTGTGGCCAGAGCAAACTTGCATCATTTAGGCCAGTTCCTAGCTGGTAAGCGTGCTGATGCGCCACAAGAGGCGCTTCAAATTCTTGATATTGTATTACGAGAGCTATCAACTAAGAGGTATTGCCCCATTGGGAGGTCTTTCTTTTCACCTGATATAAGAAGACCACAACGGCTTGGAGAGGGATTAGAGTCATGGTGTGGATTTTACCAGAGCATAAGGCCTACTCAGATGGGCCTTTCCCTCAATATAGATATGGCGTCTGCTGCATTCATCGAGCCTCTTCCAGTTGTAGAATTTGTTGGCCAGCTTTTAGGGAAAGATGTTCTGTCAAGACCATTGTCGGATGCCGATCGCATCAAGATTAAGAAAGGCCTTAGAGGAGTTAAAGTTGAAGTAACACACAGAGGAAGTGTAAGAAGAAAATACCGTGTTTCAGGGTTGACTTCTCAACCAACAAGAGAACTTGTGTTTCCTGTGGATGAGAATTCAACAATGAAGTCAGTAGTCGAATACTTTCAAGAGATGTATGGTTTCACTATTCAATACACACACCTTCCTTGCCTTCAAGTAGGCAACCAAAAGAAGGCTAACTACTTACCTATGGAGGCATGCAAAATTGTCGAAGGCCAACGTTATACAAAAAGATTGAATGAGAAGCAAATTACTTCTCTATTGAAAGTTACTTGTCAGAGACCTCGTGATCGGGAAAATGACATTTTACAGACTGTTCAACATAATGCTTATGACCAAGATCCTTACGCAAAGGAATTTGGAATTAATATCAGTGAGAAGCTAGCTTCTGTTGAAGCACGAATTCTTCCCACCCCTTGGCTTAAATATCACGAAAGTGGGAAAGAAAAGAACTGTTTACCCCACGTTGGTCAGTGGAACATGATGAATAAGAAAATGATTAATGGAATGACTGTTAACCGGTGGGCATGCATAAATTTCTCACGGAGCGTGCAAGATAGTGTTGCTCGCACTTTTTGTAATGACCTTGCTCAAATGTGTCAAGTATCTGGCATGGAATTTAACCTGGAGCCTGTTATTCCTATCTACAATGCCAAGCCTGAGCAGGTGGAGAAAGCTTTGAAGCATGTCTACCATGTGTCAACAAACAAAACTAAAGGAAAGGAGTTGGAGCTTTTGTTAGCAATATTACCAGACAGTAATGGTTCTCTCTATGGTGATCTCAAGCGTATTTGTGAAACTGACCTTGGTATTATCTCACAATGCTGCCTTACAAAGCATGTCTTCAAAATCACTAAACAGTATTTGGCTAACGTGTCTCTGAAGATCAATGTTAAGATGGGAGGGAGAAATACTGTTCTTCTTGATGCTGCAAGCTACAGAATACCATTAGTTAGCGACATACCAACCATAATTTTTGGAGCAGATGTTACACACCCTGAAAATGGAGAAGACTCTAGCCCCTCAATAGCAGCTGTTGTAGCCTCCCAAGATTGGCCTGAAGTGACAAAATATGCTGGCTTAGTGTGTGCTCAAGCTCATAGACAGGAACTTATACAAGATTTATACAAAACTTGGCATGATCCTGCTCGCGGCACAGTTAGTGGTGGCATGATAAGAGATTTACTGATTTCCTTCAGAAAGGCCACGGGTCAAAAGCCACTACGAATTATATTTTACAGGGATGGTGTAAGTGAAGGACAATTTTACCAAGTATTACTTTATGAGTTGGATGCAATCCGGAAGGCTTGCGCTTCCTTAGAACCAAATTATCAGCCTCCAGTAACTTTCATAGTTGTACAAAAGCGACATCATACTCGGTTATTCCCAAACAACCATAGGGACAGGAGCAGTACCGATAAGAGCGGGAATATTTTGCCTGGGACCGTTGTCGATACTAAAATTTGCCATCCGACAGAATTTGATTTTTATCTCTGCAGTCATGCTGGCATCCAGGGTACTAGTCGGCCAGCTCATTATCATGTTTTATGGGATGAAAACAATTTCACAGCAGATGGAATTCAATCTTTAACAAACAATCTTTGTTATACATATGCTAGGTGCACTCGATCCGTATCCATTGTTCCTCCAGCATATTATGCACATTTAGCGGCCTTTCGAGCCCGTTTCTATATGGAACCAGAGATGCAAGAGAATGGTTCGACAGGTGATGGTAATTCTAGTCATAGCTCCAAAGGAACAACAAGAGCAGCTGGAGAATGTGGTGTTAAGCCGTTACCAGCCTTGAAAGATAATGTGAAGAGAGTGATGTTTTACTGTTAG 2937 0.4127 MPVMQLKESSEQHIVIKTNLQNPKNTPKASSQNGKAPPPTSIQNNNQTSPPQPRNKGRRRGRGGRKSDQGEILTRPSSRPCTEITSAINGNVENGYNSGDIDVGFPTSSKSMNFTRRPGFGQVGTKCIVKANHFFAELPDKDLNQYDVTITPEVSSRTVNRSIIAELVRLYKESDLGMRLPAYDGRKSLYTAGQLPFSWKDFTIKLVDEEDAVNCPKRVKEYRVVIKFVARANLHHLGQFLAGKRADAPQEALQILDIVLRELSTKRYCPIGRSFFSPDIRRPQRLGEGLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVVEFVGQLLGKDVLSRPLSDADRIKIKKGLRGVKVEVTHRGSVRRKYRVSGLTSQPTRELVFPVDENSTMKSVVEYFQEMYGFTIQYTHLPCLQVGNQKKANYLPMEACKIVEGQRYTKRLNEKQITSLLKVTCQRPRDRENDILQTVQHNAYDQDPYAKEFGINISEKLASVEARILPTPWLKYHESGKEKNCLPHVGQWNMMNKKMINGMTVNRWACINFSRSVQDSVARTFCNDLAQMCQVSGMEFNLEPVIPIYNAKPEQVEKALKHVYHVSTNKTKGKELELLLAILPDSNGSLYGDLKRICETDLGIISQCCLTKHVFKITKQYLANVSLKINVKMGGRNTVLLDAASYRIPLVSDIPTIIFGADVTHPENGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKTWHDPARGTVSGGMIRDLLISFRKATGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFIVVQKRHHTRLFPNNHRDRSSTDKSGNILPGTVVDTKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGIQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPEMQENGSTGDGNSSHSSKGTTRAAGECGVKPLPALKDNVKRVMFYC* 979
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3843 978 MobiDBLite consensus disorder prediction 937 953 - -
Mtr1g3843 978 Pfam PAZ domain 348 452 IPR003100 GO:0005515
Mtr1g3843 978 SMART DUF1785_2 269 321 IPR014811 -
Mtr1g3843 978 PANTHER PROTEIN ARGONAUTE 10 55 977 - -
Mtr1g3843 978 MobiDBLite consensus disorder prediction 11 54 - -
Mtr1g3843 978 Gene3D paz domain 315 440 - -
Mtr1g3843 978 Gene3D - 679 978 IPR036397 GO:0003676
Mtr1g3843 978 SMART Piwi_a_2 610 931 IPR003165 GO:0003676
Mtr1g3843 978 Pfam N-terminal domain of argonaute 126 260 IPR032474 -
Mtr1g3843 978 Pfam Argonaute linker 1 domain 270 319 IPR014811 -
Mtr1g3843 978 MobiDBLite consensus disorder prediction 1 83 - -
Mtr1g3843 978 ProSiteProfiles Piwi domain profile. 610 931 IPR003165 GO:0003676
Mtr1g3843 978 MobiDBLite consensus disorder prediction 935 956 - -
Mtr1g3843 978 Pfam Mid domain of argonaute 519 596 IPR032473 -
Mtr1g3843 978 Gene3D - 500 673 - -
Mtr1g3843 978 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 55 977 - -
Mtr1g3843 978 Pfam Argonaute linker 2 domain 462 508 IPR032472 -
Mtr1g3843 978 ProSiteProfiles PAZ domain profile. 322 436 IPR003100 GO:0005515
Mtr1g3843 978 SUPERFAMILY Ribonuclease H-like 602 931 IPR012337 -
Mtr1g3843 978 SMART PAZ_2_a_3 326 458 IPR003100 GO:0005515
Mtr1g3843 978 CDD Piwi_ago-like 480 930 IPR045246 -
Mtr1g3843 978 SUPERFAMILY PAZ domain 316 476 IPR036085 GO:0005515
Mtr1g3843 978 CDD PAZ_argonaute_like 321 435 - -
Mtr1g3843 978 Pfam Piwi domain 611 930 IPR003165 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3843 Mtr-Chr1 50030273 50037347 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3843 1 978 Eukaryotic Initiation Factors Gene Family AT5G43810 80.619 0.0 1636
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3843 K11593 - gmx:100816999 1767.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0190 5 1732955 1735279 Mtr1g3843 1 50030273 50037347 PCT