Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3839 ATGGGCAAAAATAAGTTTTCCACAACATCTTCCCTTCTTATATTAAGAGAGATATTCAAAGTTGAGGATTCTGTTTCCATGGCCTCTAAAACTGAAAGCGGGAGTCCAAGAGATACCCCACCATCACCGCCAAAGAGTATATACAAGGATCCAGATGATGGGCGACAACGGTTTTTGCTGGAACTGGAATTTGTTCAATGCCTTGCAAATCCTACCTACATACACTATTTGGCTCAGAACAGATATTTTGAGGATGAAGCATTCATTGGGTACTTAAAGTATCTACAATATTGGCAACGCCCTGAATATATTAAATTTATCATGTATCCTCACTGCCTCTATTTTCTCGAGCTTCTTCAGAATGCAAATTTTCGCAATGCAATGGCACATCCTACCAATAAGGAATTGACACATAGACAGCAGTTCTACTTCTGGAAGAACTATAGGAACAATCGGCTAAAACACATTTTACCAAGATCACTTGCAGAACCTAGTGCTGCGCTTCCTGCTCCTGCTTCAACTCAACCCCAGCCACCTGTGCCTGCACTACCACCAGTACCTGCTACAAGCGTTGCGGTGACAACATCTTCTAGTCAAGCTCCTTCTCCAATGCCATATGGTATACCCCCTGGCTCCGGTATTGCAAAAAATGACATGAGGAATACTTCAGCTGATAGAAGGAAAAGAAAGTGA 693 0.4228 MGKNKFSTTSSLLILREIFKVEDSVSMASKTESGSPRDTPPSPPKSIYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNANFRNAMAHPTNKELTHRQQFYFWKNYRNNRLKHILPRSLAEPSAALPAPASTQPQPPVPALPPVPATSVAVTTSSSQAPSPMPYGIPPGSGIAKNDMRNTSADRRKRK* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3839 230 MobiDBLite consensus disorder prediction 27 50 - -
Mtr1g3839 230 Pfam SOH1 56 148 IPR008831 GO:0003712|GO:0006355|GO:0016592
Mtr1g3839 230 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 31 38 230 - -
Mtr1g3839 230 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 31 38 230 IPR008831 GO:0003712|GO:0006355|GO:0016592
Mtr1g3839 230 Gene3D Mediator of RNA polymerase II, submodule Med31 (Soh1) 44 145 IPR038089 -
Mtr1g3839 230 MobiDBLite consensus disorder prediction 171 186 - -
Mtr1g3839 230 MobiDBLite consensus disorder prediction 167 230 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SOH1 Mtr1g3839 Med31 1.9e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3839 K15153 - gmx:100527879 314.694
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3839 1 49974289 49986361 Mtr1g3839 1 49974289 49986361 ECH