Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3833 ATGACGACGACCAATGGAGACGATAATGAGAATAGTTTAGAGTTGGATAAAGAAAAGAAGAATAAGAAGAAAAAAGCAAAGTCTGAAGAAGAATTTGTAGTAATGGAAAACAAGGTGGAGGATCCCAATGGGATTTCTAAATTTAAGATATCGGAGCCGTTGAGAGAAAAGTTGAAGGAAAAGGGAATTGAGTCATTGTTTCCTATTCAGGCTATGACTTTTGATATCATTCTTCAAGGTTGTGATTTGGTTGGTAGAGCTCGCACTGGTCAGGGTAAAACTCTTGCCTTTGTATTGCCCATATTAGAATCTGTAACAAATGGCAAAGCAAAAGAAACAAACGCCAAAACAAAAGAAACGAATGGCAATGCAAGAGAATCAAGGAAGGGGGGCTATGGAGGGCCTCCGAAACCAAGTGTTCTTGTGCTTTTACCTACGAGGGAGTTGGCCTGTCAGGTGAATGCTGATTTTGAAGTTTATGGTGGGGCAATGGGATTGACTTCTTGTTGTTTATATGGAGGAGCTCCATATAAAGCTCAAGAAATCAAGCTTGAGAGAGGTGTCGATATTGTCATTGGCACACCGGGCCGCATAAAGGATCATATAGTGCGGGGAAGTATTGACCTGAGCCAACTAAAGTTTCGTGTTCTCGATGAAGCAGATGAGATGCTGAGGATGGGTTTTGTTGAAGATGTTGAATTGATTCTAGGTAAGGTAAAAAATGTTGATCAAGTTCAGACACTTCTATTCAGTGCTACTTTGCCAGAATGGGTTAAGAATATCGCTAAAAGATTTCTTAAAGAAGATAAGCAAACTGCTGACCTTGTTGGAAATACAAAAATGAAGGCTAGTACCAGTGTTAGGCATTATATTCTTCCTTGTACTGGTGCTGCTAGGTCCCAGCTTATCCCAGACATTATTCGATGTTACAGCAGTGAAGGTCGAACAATTATATTCACTGAGACAAAGGAATCAGCATCTCAGCTTGCAGAGTTGTTGCCTGGAGCAAGAGCTCTCCATGGTGACATACAACAAGCACAACGCGAGGTTACTTTGTCTGGCTTCAGGTATGGGAAATTCATGACATTAGTTGCCACAAATGTGGCAGCACGGGGTCTGGATATTAACGACGTTCAGTTAATTATTCAGTGTGAACCTCCAAGGGATGTAGAAGCCTATATCCATCGTTCTGGGCGCACAGGAAGAGCAGGTAACACTGGAGTTGCTGTTATGCTTTATGATCCAAGGAGGTCAAATATACCTAAAATAGAGAGAGAGTCAGGTGTTAAATTTGAACATATATCTGCCCCTCAGGCCAATGATATTGCCAAAGCTGTTGGCCGAGAAGCTGCAGAAATGATCATGCAGGTGTCTGATAGTGTGATTCCTGCATTCAAGTCTGCTGCTGAGGAGCTTTTGAATAACTCCGGTTTATCAGTTGTTGATTTATTTGCAAAGGCTCTTGCCAAGGCTGTTGGTTATACTGAGATCAAGAAAAGATCTCTTCTCTCTTCAATGGAGAACTATGTTACATTACTTCTCGAGAACGAGAAACCTATCTTTACCCCAACTTTTGCATATAAAATCTTGAGGAGGTTTTTGCCTGAAGAGAAGGTTGAGGCTGTGAAAGGTCTTACTATCACTGCAGATGGAAATGGTGTTGTTTTTGATGTAGCAGCTGAAGATTTAGATACATATCTTGCTGGTAAGGAAAATGTCTCAGATGTAAGATTAGAGGTGTTGAAAGAATTGCCACGTCTGCAACAGAGAGATCAATCAAGAGGTGGTAGATTTGGTGATGGTGGTGGTCGTGGTGGGGGTAGTAGGTTTTCAGGTGGTGGCAGGAATGGTAGATTTTCAAGTGATAGATTTTCCAACGGTGGTGGTAGAGGTCGTGGCGGCAACTGGGGTGGGAACAAATGGTGA 1926 0.4195 MTTTNGDDNENSLELDKEKKNKKKKAKSEEEFVVMENKVEDPNGISKFKISEPLREKLKEKGIESLFPIQAMTFDIILQGCDLVGRARTGQGKTLAFVLPILESVTNGKAKETNAKTKETNGNARESRKGGYGGPPKPSVLVLLPTRELACQVNADFEVYGGAMGLTSCCLYGGAPYKAQEIKLERGVDIVIGTPGRIKDHIVRGSIDLSQLKFRVLDEADEMLRMGFVEDVELILGKVKNVDQVQTLLFSATLPEWVKNIAKRFLKEDKQTADLVGNTKMKASTSVRHYILPCTGAARSQLIPDIIRCYSSEGRTIIFTETKESASQLAELLPGARALHGDIQQAQREVTLSGFRYGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRRSNIPKIERESGVKFEHISAPQANDIAKAVGREAAEMIMQVSDSVIPAFKSAAEELLNNSGLSVVDLFAKALAKAVGYTEIKKRSLLSSMENYVTLLLENEKPIFTPTFAYKILRRFLPEEKVEAVKGLTITADGNGVVFDVAAEDLDTYLAGKENVSDVRLEVLKELPRLQQRDQSRGGRFGDGGGRGGGSRFSGGGRNGRFSSDRFSNGGGRGRGGNWGGNKW* 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3833 641 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 7 13 616 - -
Mtr1g3833 641 CDD DEADc 54 268 - -
Mtr1g3833 641 Pfam DEAD/DEAH box helicase 67 260 IPR011545 GO:0003676|GO:0005524
Mtr1g3833 641 SMART helicmild6 327 404 IPR001650 -
Mtr1g3833 641 MobiDBLite consensus disorder prediction 110 135 - -
Mtr1g3833 641 Pfam GUCT (NUC152) domain 493 588 IPR012562 GO:0003723|GO:0004386|GO:0005524
Mtr1g3833 641 Pfam Helicase conserved C-terminal domain 307 404 IPR001650 -
Mtr1g3833 641 CDD GUCT_RH7_like 500 585 - -
Mtr1g3833 641 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 302 461 IPR001650 -
Mtr1g3833 641 CDD SF2_C_DEAD 287 413 - -
Mtr1g3833 641 SMART ultradead3 62 290 IPR014001 -
Mtr1g3833 641 Gene3D - 507 583 - -
Mtr1g3833 641 SUPERFAMILY RNA-binding domain, RBD 497 580 IPR035979 GO:0003676
Mtr1g3833 641 Gene3D - 272 431 IPR027417 -
Mtr1g3833 641 MobiDBLite consensus disorder prediction 10 29 - -
Mtr1g3833 641 Gene3D - 1 271 IPR027417 -
Mtr1g3833 641 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 137 416 IPR027417 -
Mtr1g3833 641 MobiDBLite consensus disorder prediction 589 641 - -
Mtr1g3833 641 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 216 224 IPR000629 -
Mtr1g3833 641 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 13 616 - -
Mtr1g3833 641 MobiDBLite consensus disorder prediction 1 29 - -
Mtr1g3833 641 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 74 272 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3833 Mtr-Chr1 49890473 49895642 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3833 39 461 Eukaryotic Initiation Factors Gene Family AT3G19760 28.103 6.83e-39 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3833 K16911 - gmx:100820207 865.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3833 1 49890473 49895642 Mtr1g3833 1 49890473 49895642 ECH