Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3830 ATGGCCGAAGATCAGAATCAACATAAAATATTAACTACATCGGACAATGATGATAAAAAGATGATTCGTAGGGAAGTTGAAAAGCAAAGGAGGATGCAAATGTCTATTCTATGTTCATCACTCCGTTCTTCACTTCCTTTTGATCTCATCAAGGGTAAGCGTTCAGTATCAGATCACATAGGTGAGGCTGCAAATTATGTACAAATTTTGAAGCAGAAAATTAATGAACTTGAAATAAAGAGAGATAAAATGAAAGAAATGGTTAGTTCAAGTAGGGTTGAAACTGGAAATGAATTATCAGCAGATCCTTCAAGTGTAGTGAAGTGTGTCAAGATTGATCTAATTCCAGGAGGGGTGGAAATTGTTATATGTAGTGGTCTCGAGGATTATAGTTCACGTTTATCAGATTTAATGAAAATAATACTTCAAGAAGGATGTGATGTTGTTCATTGTGTTACCAACCAAGTAAATGGCAAGATATTTCATACTATTAAATCTGAGGTGGAAGACTTGGCACACCTTAATCTTGCTCGGCTGCAAAATAAACTGGATCATGCAATTTTATTGTCAAGGTAA 576 0.3507 MAEDQNQHKILTTSDNDDKKMIRREVEKQRRMQMSILCSSLRSSLPFDLIKGKRSVSDHIGEAANYVQILKQKINELEIKRDKMKEMVSSSRVETGNELSADPSSVVKCVKIDLIPGGVEIVICSGLEDYSSRLSDLMKIILQEGCDVVHCVTNQVNGKIFHTIKSEVEDLAHLNLARLQNKLDHAILLSR* 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3830 191 Gene3D - 10 96 IPR036638 GO:0046983
Mtr1g3830 191 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 3 191 IPR015660 GO:0003700|GO:0006357
Mtr1g3830 191 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 3 191 - -
Mtr1g3830 191 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 18 70 IPR011598 GO:0046983
Mtr1g3830 191 Coils Coil 60 94 - -
Mtr1g3830 191 CDD bHLH_AtORG2_like 19 94 - -
Mtr1g3830 191 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 15 87 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3830 Mtr-Chr1 49881286 49882526 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3830 13 183 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G51780 35.754 2.48e-28 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3830 - - ccaj:109790384 253.832
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3830 1 49881286 49882526 Mtr1g3830 1 49881286 49882526 ECH
Mtr6g1592 6 28667493 28671828 Mtr1g3830 1 49881286 49882526 PCT