Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3829 ATGTTTCCTTTACAACGATGCAATGAACTGGCGAAACCCTTATCTAATAGTCTCAACCACCACCAACATCACAAAATCTCTGAAGATCTGATTCTTGATGATTGTGATTCTCTAGTAATTGATTTTTCTCTTAAAAAAATGGATACTAACCGGCCACCAAACAAATTATTTTATATAGATCGTGCAAATCATGGTAGTAATCGTAATTCTATTGAAGATAAGAAGAAAATGGTTCATAGGGAAATTGAGAAGCAAAGGAGACAAGAAATGGCTACCCTTCATACTTCTCTTAGATCCCTTCTCCCTCTTCACTTCATCAAGGGAAAACGTTCTTTATCTGATCAAATGAATGAGGCAGTGAATTACATAAATCACTTGAAGAAGAATATGAAAGAACTAAGTTACAAAAGGGATGAACTGAAAAAACTCTCTAATCCTAGTCTTAAAAATAAAAGCCATGTTTCTTGTAGTTTCACTATCCACAAGAATAATAGAACTGTGGGAATTGAAATCAGTACTAAAACTGGCTTTATAGAGGAAGGTGCCCCACTTTCTAAATTTCTGGAACAACTGATGAGATATGGACTTGATGTTGTTAGCTGCTTTTCTATTCAAGTCAATGGAAAATTACTCCATAGTGTGCAGTGTGAGGTTATCAATTCCGACAGTGTAGATCTAACTGAGCTAAGAAGGAACTTATCCAATTTGAATCCGTCATTTAGTTGTTCAGATTAA 735 0.3483 MFPLQRCNELAKPLSNSLNHHQHHKISEDLILDDCDSLVIDFSLKKMDTNRPPNKLFYIDRANHGSNRNSIEDKKKMVHREIEKQRRQEMATLHTSLRSLLPLHFIKGKRSLSDQMNEAVNYINHLKKNMKELSYKRDELKKLSNPSLKNKSHVSCSFTIHKNNRTVGIEISTKTGFIEEGAPLSKFLEQLMRYGLDVVSCFSIQVNGKLLHSVQCEVINSDSVDLTELRRNLSNLNPSFSCSD* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3829 244 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 74 126 IPR011598 GO:0046983
Mtr1g3829 244 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 1 242 - -
Mtr1g3829 244 Gene3D - 65 155 IPR036638 GO:0046983
Mtr1g3829 244 Coils Coil 68 88 - -
Mtr1g3829 244 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 1 242 IPR015660 GO:0003700|GO:0006357
Mtr1g3829 244 CDD bHLH_AtORG2_like 75 145 - -
Mtr1g3829 244 Pfam Helix-loop-helix DNA-binding domain 75 127 IPR011598 GO:0046983
Mtr1g3829 244 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 73 143 IPR036638 GO:0046983
Mtr1g3829 244 Coils Coil 123 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3829 Mtr-Chr1 49875117 49876346 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3829 73 233 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G51780 44.444 8.75e-37 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mtr1g3829 HLH 5.3e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3829 - - gmx:100780888 261.922
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3829 1 49875117 49876346 Mtr1g3829 1 49875117 49876346 ECH
Mtr6g1591 6 28641469 28644926 Mtr1g3829 1 49875117 49876346 PCT