Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3818 ATGGAAGAAATACAATACAATACAATACAACCACATATTTCCTTCATTCATTCAAATACAAACATCATCGCTCCTCATATGTTCCAATTCCATTTTTCTTCTTCTTCAAATCAAACACCCATATTGGAGGTTTCTGCTTCCTCTTCAGCAATGATCTTCTCTATTCGCACCGGTTTCTGCCTATTTCTACTGGTGTCGGCATTCATGGTGTTTTTGGCTTACTACTTGATCCCGGATCCGGATCTCCATCCTCAAGGATCTGAAGCTGACAAGGTGATCCGTTTACCAGATCAGCCTGAGATTTACTTCCAACAGTTTTCTGGCTACATTACTGTTGATGAAGTCAACCAAAGGAGCCTCTTCTACTATTTTGTAGAATTTGAGGTTGATGCAACATCAAAACCTGTAGTCCTACGGTTAAATGGAGGACCTGGCTGTTCTTCTATTGGCCAAGGAGCATTTGCTGAACATGGTCCTTTTAAGCCCACCAAAAAGGGTGGTCTAGTAAAAATTAGGTACAGCTGGAACCGAGTGACCAATATGCTGTATTTGGAGTCCCCTGCAGGTGTTGGCTTCTCTTACTCCGCCAACACCTCTGATTATTTCATGGTGACCGACGAGAGGACAGCAAGGGATGTCCTTATTTTCCTCCAAGGTTGGGTTACCAAGTTCCAAAAGTATCAGAATAGCGATTTTTTCATTACCGGAGAAAGCTATATGGGCAATCCTCTTCTGGAATTTACCACTGATTACAATTCCAGGGCTGAATTTTTATGGTCCCATGGATTGATATCCGTGGAAACATACGGGCTGTTGCGGACTGTCTGCAACTACGCCCAAATTATGAGTGAAAACATAAATGGGACACTTAGTCCCATTTGTGATCGAGTGCTTTATCAGTTTGCTTCTGAGGTTGGTCCATTTGTTGATTCTTTTAATATCATTGAAGACATTTGCCTCCCATCTGAATTTCAGTTGGTTTATGAGACTTCAATGGAAACTGGAGAGAAGAGAGATGTATGTGTGGAAGGTGAAACCTCCACATACATGAATAGAAGCGAAGTGCAAGAAGCAATTCATGCAAAGCTGGTAGGAGTCACCAAGTGGACTACATGTAGCGATGTCCTCCTCTACAACTGGAAGAATCTTGAGGATCCGACTATATCTCTACTGGGGAGACTTGTTAGGTCCGGGATACGAGTTATGGTGTATAGTGGAGACCAGGATTCGCTCATTCCATTAACTGGGACAGAGTCTCTGTTAAAGGGGTTGGCCAAGGATATCGGTCTGGACATTAGTGACCACTACAGGTCCTGGTTTGATGGACCACAGGTTGCTGGATGGACTGAAACTTATGGTGACATCCTCACCTTTGCAACCATTAGAGGAGCGGGTCATGCAGCCCCAACTTCTCAACCAGGGAGGTCCCTCCGGCTGTTTCAGAGTTTCATAGAAGCAAAACCACTTCCAAGAAATGAATTGAAATGTCTAGAGAGGAAAGAGGAGGAGCTTAGTGGGTTTCTATGCCATGGATTGAATGTTGTTAAATGGGTTATTTATGTCAAGTTGCTGCAAGTGGTGAGAGAGACATGA 1593 0.4344 MEEIQYNTIQPHISFIHSNTNIIAPHMFQFHFSSSSNQTPILEVSASSSAMIFSIRTGFCLFLLVSAFMVFLAYYLIPDPDLHPQGSEADKVIRLPDQPEIYFQQFSGYITVDEVNQRSLFYYFVEFEVDATSKPVVLRLNGGPGCSSIGQGAFAEHGPFKPTKKGGLVKIRYSWNRVTNMLYLESPAGVGFSYSANTSDYFMVTDERTARDVLIFLQGWVTKFQKYQNSDFFITGESYMGNPLLEFTTDYNSRAEFLWSHGLISVETYGLLRTVCNYAQIMSENINGTLSPICDRVLYQFASEVGPFVDSFNIIEDICLPSEFQLVYETSMETGEKRDVCVEGETSTYMNRSEVQEAIHAKLVGVTKWTTCSDVLLYNWKNLEDPTISLLGRLVRSGIRVMVYSGDQDSLIPLTGTESLLKGLAKDIGLDISDHYRSWFDGPQVAGWTETYGDILTFATIRGAGHAAPTSQPGRSLRLFQSFIEAKPLPRNELKCLERKEEELSGFLCHGLNVVKWVIYVKLLQVVRET* 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3818 530 Pfam Serine carboxypeptidase 101 241 IPR001563 GO:0004185|GO:0006508
Mtr1g3818 530 Gene3D alpha/beta hydrolase 86 320 IPR029058 -
Mtr1g3818 530 Gene3D - 388 486 - -
Mtr1g3818 530 SUPERFAMILY alpha/beta-Hydrolases 86 491 IPR029058 -
Mtr1g3818 530 PANTHER CARBOXYPEPTIDASE 240 477 - -
Mtr1g3818 530 PANTHER CARBOXYPEPTIDASE 81 241 - -
Mtr1g3818 530 ProSitePatterns Serine carboxypeptidases, histidine active site. 456 473 IPR033124 GO:0004185
Mtr1g3818 530 PRINTS Carboxypeptidase C serine protease (S10) family signature 171 183 IPR001563 GO:0004185|GO:0006508
Mtr1g3818 530 PRINTS Carboxypeptidase C serine protease (S10) family signature 184 194 IPR001563 GO:0004185|GO:0006508
Mtr1g3818 530 PRINTS Carboxypeptidase C serine protease (S10) family signature 220 245 IPR001563 GO:0004185|GO:0006508
Mtr1g3818 530 PRINTS Carboxypeptidase C serine protease (S10) family signature 456 469 IPR001563 GO:0004185|GO:0006508
Mtr1g3818 530 Gene3D - 341 377 - -
Mtr1g3818 530 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 81 241 IPR001563 GO:0004185|GO:0006508
Mtr1g3818 530 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 240 477 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3818 Mtr-Chr1 49773560 49780372 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3818 344 489 Calmodulin-binding Proteins AT2G22960 32.215 5.96e-19 83.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3818 K16297 - gmx:100805028 516.538