Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3813 ATGTGTCATTTTCTGCGGTTGAAGTCAGAGAGAGAGAGAGAAAGCAATATGGGAAGAGGGAAGGTGATTATGGAGAGAATACATAACAAGATCAATAGACAAGTAACATTTTCAAAGAGAAGAAGTGGTTTGTTGAAGAAAGCTTTTGAACTTTCTGTGTTATGTGATGCTGAAGTTGCTCTTATCATCTTCTCCAGTCTTGGCAAGCTTTTTCAATACAGTACTACTGACTTGAACAAAATCATTGAGAAGTATCGTCAATGTTGCTTCAACAATATGTCTGAGAATGGTTACTTAGGAGAACATGAGTCACAGGGCTTATACCAGGAGCTTTTGATGCTAAGAGTCAAGCATGAATCTCTTGCCCGGACACAAAGGAATTTTTTGGGGGAAGAAATCAATGCACTTAGCATAAAAGATTTGCAAAGTCTAGAGAAACAACTGGAGAGAACGCTTGCTCAAGCTCGAAAGCACCAAATGCAAAAGCTAATGGAAAGAGTTGATGAATTACGTGAGGAGGTGCACAAGGTGGAGGAGGTCAACAAAGAATTAGAATCCAAGATTTGTGACAATTCTACGGATTCCACCATCTCGAGTAACAACAATATCATTACCAATTTGCTTGATGCACAAGCCAATCCGTTTGAACATGTGACAACTGGACAGTTTCTGCACCTACAAGATGCTTCAAAAAGACAAGCAACAGATATAAGGACTGACATAGGACAAAGCAGTCGCAACAAGAACATTGGATGGATGAATATTTGA 768 0.3932 MCHFLRLKSERERESNMGRGKVIMERIHNKINRQVTFSKRRSGLLKKAFELSVLCDAEVALIIFSSLGKLFQYSTTDLNKIIEKYRQCCFNNMSENGYLGEHESQGLYQELLMLRVKHESLARTQRNFLGEEINALSIKDLQSLEKQLERTLAQARKHQMQKLMERVDELREEVHKVEEVNKELESKICDNSTDSTISSNNNIITNLLDAQANPFEHVTTGQFLHLQDASKRQATDIRTDIGQSSRNKNIGWMNI* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3813 255 Gene3D - 29 105 IPR036879 GO:0003677|GO:0046983
Mtr1g3813 255 PANTHER MADS-BOX TRANSCRIPTION FACTOR 17 211 - -
Mtr1g3813 255 ProSiteProfiles MADS-box domain profile. 17 77 IPR002100 GO:0003677|GO:0046983
Mtr1g3813 255 ProSiteProfiles K-box domain profile. 104 194 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mtr1g3813 255 SUPERFAMILY SRF-like 18 94 IPR036879 GO:0003677|GO:0046983
Mtr1g3813 255 Coils Coil 138 187 - -
Mtr1g3813 255 ProSitePatterns MADS-box domain signature. 19 73 IPR002100 GO:0003677|GO:0046983
Mtr1g3813 255 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 26 73 IPR002100 GO:0003677|GO:0046983
Mtr1g3813 255 PANTHER MADS BOX PROTEIN 17 211 - -
Mtr1g3813 255 PRINTS MADS domain signature 19 39 IPR002100 GO:0003677|GO:0046983
Mtr1g3813 255 PRINTS MADS domain signature 39 54 IPR002100 GO:0003677|GO:0046983
Mtr1g3813 255 PRINTS MADS domain signature 54 75 IPR002100 GO:0003677|GO:0046983
Mtr1g3813 255 Pfam K-box region 101 188 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mtr1g3813 255 SMART madsneu2 17 76 IPR002100 GO:0003677|GO:0046983
Mtr1g3813 255 CDD MADS_MEF2_like 18 88 IPR033896 GO:0000977|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3813 Mtr-Chr1 49681595 49685347 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3813 17 227 MADS-box Gene Family AT2G45650 43.290 4.88e-56 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mtr1g3813 K-box 1.9e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3813 K09264 - gmx:100778860 268.085
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3813 1 49681595 49685347 Mtr1g3813 1 49681595 49685347 ECH
Mtr1g3813 1 49681595 49685347 Mtr6g1575 6 28145724 28151121 PCT