Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3809 ATGGATAAGGAAAAGGTTCCTATTAGCATTGTGGTTATTGGTCATGTCGACTCCGGGAAGTCAACCACTACTGGTCATTTCATCCACAAACTTGGATGTATTCACAAGAGTGTCATCGAGAGTCTTGAGAAAGAAGCTGCTGAGATGATCAAGCGTTCATTCAAGTATGCTTGGGTGCTTGACAAGCTCAAGACTGAGCGTGAAAGAGGTATCACAATTGACAGTTCTTTGTCGAAGTTTGAGACAAACAAGTACAGCTGCACTGTCATTGATGCCTCCGGACACAGGGATTTCATTAAGAACATGATCACCGGGACGTCCCAAGCTGATTGTGCTGTTCTCATCATTGATTCCACTACTCGTGGTTTTGAAGCCGGTATTTCAAAGGATGGTCAGACTCGTGAACATGCTCTTCTTGCCTTCACTCTTGGTGTGAATCAAATGATCTGTTGCTGCAACAAGGATCATGGTTGGTCTTCCTTCTGCTGA 489 0.4438 MDKEKVPISIVVIGHVDSGKSTTTGHFIHKLGCIHKSVIESLEKEAAEMIKRSFKYAWVLDKLKTERERGITIDSSLSKFETNKYSCTVIDASGHRDFIKNMITGTSQADCAVLIIDSTTRGFEAGISKDGQTREHALLAFTLGVNQMICCCNKDHGWSSFC* 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3809 162 Gene3D - 1 156 IPR027417 -
Mtr1g3809 162 PRINTS GTP-binding elongation factor signature 9 22 IPR000795 GO:0003924|GO:0005525
Mtr1g3809 162 PRINTS GTP-binding elongation factor signature 68 76 IPR000795 GO:0003924|GO:0005525
Mtr1g3809 162 PRINTS GTP-binding elongation factor signature 88 98 IPR000795 GO:0003924|GO:0005525
Mtr1g3809 162 PRINTS GTP-binding elongation factor signature 104 115 IPR000795 GO:0003924|GO:0005525
Mtr1g3809 162 Pfam Elongation factor Tu GTP binding domain 8 154 IPR000795 GO:0003924|GO:0005525
Mtr1g3809 162 ProSiteProfiles Ig-like domain profile. 7 104 IPR007110 -
Mtr1g3809 162 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 154 IPR027417 -
Mtr1g3809 162 PANTHER TRANSLATION FACTOR 1 154 - -
Mtr1g3809 162 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 61 76 IPR031157 -
Mtr1g3809 162 PANTHER ELONGATION FACTOR 1-ALPHA 1-RELATED 1 154 - -
Mtr1g3809 162 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 5 162 IPR000795 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3809 Mtr-Chr1 49638135 49639881 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3809 1 154 Eukaryotic Initiation Factors Gene Family AT1G07930 86.364 2.71e-91 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3809 K03231 - dcr:108208917 266.159