Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3808 ATGGCTAAGAAAAAGGTTCGTATTAACATTGTGGTTATTGGTCATGTGGACTCCGGGAAGTCAACCACTACTGGTCATTTGATCCACAAACTTGGATGTATTCACAAGAGTGTCATTGAGAGTCTTGAGAAAGAAGCTGCTAAGATGAACAAGCGTTCATTCAAGTATGCTTGGGTGCTTGACAAGCTCAAGGCTGAACGTGAAAGAGGTGTTACAATTGACATTACCCTGTCGAAGTTTGAGACAAACAAGTACAACTGCACTGTCATTGATGCCCCCGGACACAGGGATTTCATTAAGAACATGATCACCGGAACGTCCCAAGCTGACTGTGCTGTTCTCGTCATTGATTCCACTACTGGTGGTTTTGAAGCCGGTATGAATGGTCAGACCCGTGAACATGCTCTTCTTGCCTTCACTCTTGGTGTGAATCAAATGATCTGCTGCTGCAACAAGATGGATGCCACTACACCTAAATACTCTAGGGATAGGTATGTAGAAATTGTGAGGCAAGTTTTACCCTGTTTGAATAAGGTTGGCTATAAACTTATTCCAATTGTTCCCATCTCTGGTTTTGAGGGAGATAACTTGATTGAGCGCTCTACTAATCTTGATTGGTACAAGGGTCCAACCCTTCTTGAAGCTATTGACCAAATCAACGAGCCTATGAGGCCATCAGACAAGCCTCTCAGAATACCACTTCAGGATGTCTACAAGATTGGAGGAATCGGAACTGTGCCTGTGGGACGTGTTGAGACTGGTTCCTTGAACCCTGGAATGGTGCTGACTTTTGCCGCAACTGGGCTGCAAGCTGAAGTGAAGTCTGTGGAGATGCACCATGAAGCTATCGGTGAGGCCCTTCCTGGTGACATTGTGGGATTTAATGTTAACGTTGCTGCTAGGGATCTCAAGCAAGGTTATGTTGCCTCAAACTCCGAGGGTGACCCAGCGGTAGAGGCCGCTCACTTTACATCTCTTGTTATCATTACGAATCACCCTGGCCAGATTCGAAATGGCTACACACCTGTTCTTGACTGCCACACCTCCCACATTGCTGTCAAGTTTGCTGAGCTTATTTCCAAGGTTGACAGGTGTTCTGGTGAGGAAATTGAGAGGGAGCCCAAATTTTTGATGAGTGGTGATACTGGTATTATTAAGATGATTCCCACCAAGCCTATGGTGGTAGAGCCTTTCTCTCTATATCCTCCACTCGGCCGTTTTGTTGTCAGAGACTGGCATCAAACTGTGGCTGTTGGAGTCATCAAGGCTGTGAAGAAGAAGGATCCTGCTGCAGGAGCTATTTACCCTGGCTGTTACAAGGAACAGGACATTGAAACAGGGGGAGGTACCTGTTCAACTCTTGCTGGCAGAGATAAGCTTGAGTCATTATGCATGGAGTTACAGCGTCAAAATAAAATGCTGATGGAAGAATGTAAACGTGTATCTACTGAGGTGCAACAATTTAAGCTGGACTTGTTTGCCAAGTTCCAAGATGCAATCAAGGAAGATTACAAACTTGTGTCTACTGAGGCGCAACAATTTAAGCTGGACTTGTCAGCCAAGTTCCAAGATGCAATCGAGGAAGAATACAAATGTGTATCTACTGAGGCGCAACAATTTAAGCTGGACTTGTCAGCCAAGTTCCAAGATGCAATCAAGAAACTTCATCCTGACAATGCCTTTGAGGAATGCATAAGACAAGAGCTTATCCCTGCAAATGAGATAGAAGTGACTTTTTCAGATATTGGTGCTTTGGATGATATTAAAGAATCACTTCAAGAAGCGGTTATGCTTCCCCTTAGAAGACCATATCTATTCAAAGGCGATGGGCTTCTGAAGCCATGTAAAGGTGTATTGCTTTTTGGACCTCCTGGTACAGGAAAGACAATGCTCGCAAAGGCAATTGCTAATGAATCTGGAGCAAGTTTCATCAATGTCTCTCCGTCCACCATCAATTCAAAGTGGTCCGGACAAGCTGAAAAGAACGTCCGAGCTCTGTTTTCACTAGCAGCAGAGGTTGCCCCAACTATTATTTTCATCGATGAAGTGGATAGCATGCTTGGGCGGCGGTCTAGCTCTTATGAAAACAACTCAATAAGAAGGGTGAAAAACGAGTTCATGTCACGTTGGGATGGACTATTGTCAAAACCTGATGAGAAAATTATTGTTCTTGCTGCCACCAACATGCCATTTGACCTTGATGAAGCAGTTATAAGACGGTTTCAGCGAAGGATCATGGTTGGTCTTCCTTCTGCTGAAAACAGGGAAACTATCTTGAAAACTCTTCTAGCTAAGGATAAACATGAAGATATAGACTTCAAAGAGCTTTCAACTATGACAGAAGGATATAGTGGAAGTGATCTTAAGAACTTGTGCACGACTGCAGCATATTGCGCCCTTAAGGAGCTGACACATTATGAGAAAGAAAGAAAAAGGAAAAGGAAGAGAAAGTTGGAAGAAGTTGAAATCTTAGAAGATGCTTCCAATGCTGCCAAAGATGATATAGAAGATCAAGTGATTTCCCTCCGGCCTTTGAACATGGAAGACATGAGACAGGCAAAGAATAAGGTGGCTGCAAGTTTTGCTGCAGAAGGATCAATGATGAACAGGTTGAGAGAGTGGAATGATTTGTATGGAGAAGGAGGTTCAAGGAAGAAAGAGGAGCAGCTCAGTTATTTTCTTTAG 2685 0.4376 MAKKKVRINIVVIGHVDSGKSTTTGHLIHKLGCIHKSVIESLEKEAAKMNKRSFKYAWVLDKLKAERERGVTIDITLSKFETNKYNCTVIDAPGHRDFIKNMITGTSQADCAVLVIDSTTGGFEAGMNGQTREHALLAFTLGVNQMICCCNKMDATTPKYSRDRYVEIVRQVLPCLNKVGYKLIPIVPISGFEGDNLIERSTNLDWYKGPTLLEAIDQINEPMRPSDKPLRIPLQDVYKIGGIGTVPVGRVETGSLNPGMVLTFAATGLQAEVKSVEMHHEAIGEALPGDIVGFNVNVAARDLKQGYVASNSEGDPAVEAAHFTSLVIITNHPGQIRNGYTPVLDCHTSHIAVKFAELISKVDRCSGEEIEREPKFLMSGDTGIIKMIPTKPMVVEPFSLYPPLGRFVVRDWHQTVAVGVIKAVKKKDPAAGAIYPGCYKEQDIETGGGTCSTLAGRDKLESLCMELQRQNKMLMEECKRVSTEVQQFKLDLFAKFQDAIKEDYKLVSTEAQQFKLDLSAKFQDAIEEEYKCVSTEAQQFKLDLSAKFQDAIKKLHPDNAFEECIRQELIPANEIEVTFSDIGALDDIKESLQEAVMLPLRRPYLFKGDGLLKPCKGVLLFGPPGTGKTMLAKAIANESGASFINVSPSTINSKWSGQAEKNVRALFSLAAEVAPTIIFIDEVDSMLGRRSSSYENNSIRRVKNEFMSRWDGLLSKPDEKIIVLAATNMPFDLDEAVIRRFQRRIMVGLPSAENRETILKTLLAKDKHEDIDFKELSTMTEGYSGSDLKNLCTTAAYCALKELTHYEKERKRKRKRKLEEVEILEDASNAAKDDIEDQVISLRPLNMEDMRQAKNKVAASFAAEGSMMNRLREWNDLYGEGGSRKKEEQLSYFL* 895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3808 894 PANTHER TRANSLATION FACTOR 1 437 - -
Mtr1g3808 894 Gene3D Translation factors 318 425 - -
Mtr1g3808 894 Pfam AAA+ lid domain 770 806 IPR041569 -
Mtr1g3808 894 CDD AAA 616 749 - -
Mtr1g3808 894 Pfam ATPase family associated with various cellular activities (AAA) 618 748 IPR003959 GO:0005524|GO:0016887
Mtr1g3808 894 PRINTS GTP-binding elongation factor signature 9 22 IPR000795 GO:0003924|GO:0005525
Mtr1g3808 894 PRINTS GTP-binding elongation factor signature 68 76 IPR000795 GO:0003924|GO:0005525
Mtr1g3808 894 PRINTS GTP-binding elongation factor signature 88 98 IPR000795 GO:0003924|GO:0005525
Mtr1g3808 894 PRINTS GTP-binding elongation factor signature 104 115 IPR000795 GO:0003924|GO:0005525
Mtr1g3808 894 PRINTS GTP-binding elongation factor signature 146 155 IPR000795 GO:0003924|GO:0005525
Mtr1g3808 894 Coils Coil 457 484 - -
Mtr1g3808 894 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 5 226 IPR000795 GO:0003924|GO:0005525
Mtr1g3808 894 SUPERFAMILY Translation proteins 227 316 IPR009000 -
Mtr1g3808 894 Pfam Elongation factor Tu domain 2 244 299 IPR004161 GO:0005525
Mtr1g3808 894 Pfam Myosin-like coiled-coil protein 456 502 IPR026183 GO:0019905
Mtr1g3808 894 ProSitePatterns AAA-protein family signature. 721 740 IPR003960 GO:0005524|GO:0016887
Mtr1g3808 894 PANTHER ELONGATION FACTOR 1-ALPHA 1 437 - -
Mtr1g3808 894 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 575 799 IPR027417 -
Mtr1g3808 894 Gene3D - 576 862 IPR027417 -
Mtr1g3808 894 SMART AAA_5 614 751 IPR003593 -
Mtr1g3808 894 CDD EF1_alpha_II 226 315 - -
Mtr1g3808 894 CDD EF1_alpha_III 318 421 - -
Mtr1g3808 894 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 245 IPR027417 -
Mtr1g3808 894 Pfam Elongation factor Tu GTP binding domain 8 218 IPR000795 GO:0003924|GO:0005525
Mtr1g3808 894 CDD EF1_alpha 9 222 - -
Mtr1g3808 894 Pfam Elongation factor Tu C-terminal domain 318 424 IPR004160 -
Mtr1g3808 894 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 61 76 IPR031157 -
Mtr1g3808 894 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 321 424 IPR009001 -
Mtr1g3808 894 TIGRFAM EF-1_alpha: translation elongation factor EF-1, subunit alpha 1 428 IPR004539 GO:0003746|GO:0005525|GO:0006414
Mtr1g3808 894 Gene3D - 1 224 IPR027417 -
Mtr1g3808 894 Coils Coil 814 834 - -
Mtr1g3808 894 Gene3D Translation factors 225 311 - -
Mtr1g3808 894 Gene3D - 750 857 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3808 Mtr-Chr1 49627230 49636432 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3808 1 434 Eukaryotic Initiation Factors Gene Family AT5G60390 79.271 0.0 717
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3808 K03231 - gmx:100801611 701.049