Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mtr1g3808 | ATGGCTAAGAAAAAGGTTCGTATTAACATTGTGGTTATTGGTCATGTGGACTCCGGGAAGTCAACCACTACTGGTCATTTGATCCACAAACTTGGATGTATTCACAAGAGTGTCATTGAGAGTCTTGAGAAAGAAGCTGCTAAGATGAACAAGCGTTCATTCAAGTATGCTTGGGTGCTTGACAAGCTCAAGGCTGAACGTGAAAGAGGTGTTACAATTGACATTACCCTGTCGAAGTTTGAGACAAACAAGTACAACTGCACTGTCATTGATGCCCCCGGACACAGGGATTTCATTAAGAACATGATCACCGGAACGTCCCAAGCTGACTGTGCTGTTCTCGTCATTGATTCCACTACTGGTGGTTTTGAAGCCGGTATGAATGGTCAGACCCGTGAACATGCTCTTCTTGCCTTCACTCTTGGTGTGAATCAAATGATCTGCTGCTGCAACAAGATGGATGCCACTACACCTAAATACTCTAGGGATAGGTATGTAGAAATTGTGAGGCAAGTTTTACCCTGTTTGAATAAGGTTGGCTATAAACTTATTCCAATTGTTCCCATCTCTGGTTTTGAGGGAGATAACTTGATTGAGCGCTCTACTAATCTTGATTGGTACAAGGGTCCAACCCTTCTTGAAGCTATTGACCAAATCAACGAGCCTATGAGGCCATCAGACAAGCCTCTCAGAATACCACTTCAGGATGTCTACAAGATTGGAGGAATCGGAACTGTGCCTGTGGGACGTGTTGAGACTGGTTCCTTGAACCCTGGAATGGTGCTGACTTTTGCCGCAACTGGGCTGCAAGCTGAAGTGAAGTCTGTGGAGATGCACCATGAAGCTATCGGTGAGGCCCTTCCTGGTGACATTGTGGGATTTAATGTTAACGTTGCTGCTAGGGATCTCAAGCAAGGTTATGTTGCCTCAAACTCCGAGGGTGACCCAGCGGTAGAGGCCGCTCACTTTACATCTCTTGTTATCATTACGAATCACCCTGGCCAGATTCGAAATGGCTACACACCTGTTCTTGACTGCCACACCTCCCACATTGCTGTCAAGTTTGCTGAGCTTATTTCCAAGGTTGACAGGTGTTCTGGTGAGGAAATTGAGAGGGAGCCCAAATTTTTGATGAGTGGTGATACTGGTATTATTAAGATGATTCCCACCAAGCCTATGGTGGTAGAGCCTTTCTCTCTATATCCTCCACTCGGCCGTTTTGTTGTCAGAGACTGGCATCAAACTGTGGCTGTTGGAGTCATCAAGGCTGTGAAGAAGAAGGATCCTGCTGCAGGAGCTATTTACCCTGGCTGTTACAAGGAACAGGACATTGAAACAGGGGGAGGTACCTGTTCAACTCTTGCTGGCAGAGATAAGCTTGAGTCATTATGCATGGAGTTACAGCGTCAAAATAAAATGCTGATGGAAGAATGTAAACGTGTATCTACTGAGGTGCAACAATTTAAGCTGGACTTGTTTGCCAAGTTCCAAGATGCAATCAAGGAAGATTACAAACTTGTGTCTACTGAGGCGCAACAATTTAAGCTGGACTTGTCAGCCAAGTTCCAAGATGCAATCGAGGAAGAATACAAATGTGTATCTACTGAGGCGCAACAATTTAAGCTGGACTTGTCAGCCAAGTTCCAAGATGCAATCAAGAAACTTCATCCTGACAATGCCTTTGAGGAATGCATAAGACAAGAGCTTATCCCTGCAAATGAGATAGAAGTGACTTTTTCAGATATTGGTGCTTTGGATGATATTAAAGAATCACTTCAAGAAGCGGTTATGCTTCCCCTTAGAAGACCATATCTATTCAAAGGCGATGGGCTTCTGAAGCCATGTAAAGGTGTATTGCTTTTTGGACCTCCTGGTACAGGAAAGACAATGCTCGCAAAGGCAATTGCTAATGAATCTGGAGCAAGTTTCATCAATGTCTCTCCGTCCACCATCAATTCAAAGTGGTCCGGACAAGCTGAAAAGAACGTCCGAGCTCTGTTTTCACTAGCAGCAGAGGTTGCCCCAACTATTATTTTCATCGATGAAGTGGATAGCATGCTTGGGCGGCGGTCTAGCTCTTATGAAAACAACTCAATAAGAAGGGTGAAAAACGAGTTCATGTCACGTTGGGATGGACTATTGTCAAAACCTGATGAGAAAATTATTGTTCTTGCTGCCACCAACATGCCATTTGACCTTGATGAAGCAGTTATAAGACGGTTTCAGCGAAGGATCATGGTTGGTCTTCCTTCTGCTGAAAACAGGGAAACTATCTTGAAAACTCTTCTAGCTAAGGATAAACATGAAGATATAGACTTCAAAGAGCTTTCAACTATGACAGAAGGATATAGTGGAAGTGATCTTAAGAACTTGTGCACGACTGCAGCATATTGCGCCCTTAAGGAGCTGACACATTATGAGAAAGAAAGAAAAAGGAAAAGGAAGAGAAAGTTGGAAGAAGTTGAAATCTTAGAAGATGCTTCCAATGCTGCCAAAGATGATATAGAAGATCAAGTGATTTCCCTCCGGCCTTTGAACATGGAAGACATGAGACAGGCAAAGAATAAGGTGGCTGCAAGTTTTGCTGCAGAAGGATCAATGATGAACAGGTTGAGAGAGTGGAATGATTTGTATGGAGAAGGAGGTTCAAGGAAGAAAGAGGAGCAGCTCAGTTATTTTCTTTAG | 2685 | 0.4376 | MAKKKVRINIVVIGHVDSGKSTTTGHLIHKLGCIHKSVIESLEKEAAKMNKRSFKYAWVLDKLKAERERGVTIDITLSKFETNKYNCTVIDAPGHRDFIKNMITGTSQADCAVLVIDSTTGGFEAGMNGQTREHALLAFTLGVNQMICCCNKMDATTPKYSRDRYVEIVRQVLPCLNKVGYKLIPIVPISGFEGDNLIERSTNLDWYKGPTLLEAIDQINEPMRPSDKPLRIPLQDVYKIGGIGTVPVGRVETGSLNPGMVLTFAATGLQAEVKSVEMHHEAIGEALPGDIVGFNVNVAARDLKQGYVASNSEGDPAVEAAHFTSLVIITNHPGQIRNGYTPVLDCHTSHIAVKFAELISKVDRCSGEEIEREPKFLMSGDTGIIKMIPTKPMVVEPFSLYPPLGRFVVRDWHQTVAVGVIKAVKKKDPAAGAIYPGCYKEQDIETGGGTCSTLAGRDKLESLCMELQRQNKMLMEECKRVSTEVQQFKLDLFAKFQDAIKEDYKLVSTEAQQFKLDLSAKFQDAIEEEYKCVSTEAQQFKLDLSAKFQDAIKKLHPDNAFEECIRQELIPANEIEVTFSDIGALDDIKESLQEAVMLPLRRPYLFKGDGLLKPCKGVLLFGPPGTGKTMLAKAIANESGASFINVSPSTINSKWSGQAEKNVRALFSLAAEVAPTIIFIDEVDSMLGRRSSSYENNSIRRVKNEFMSRWDGLLSKPDEKIIVLAATNMPFDLDEAVIRRFQRRIMVGLPSAENRETILKTLLAKDKHEDIDFKELSTMTEGYSGSDLKNLCTTAAYCALKELTHYEKERKRKRKRKLEEVEILEDASNAAKDDIEDQVISLRPLNMEDMRQAKNKVAASFAAEGSMMNRLREWNDLYGEGGSRKKEEQLSYFL* | 895 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mtr1g3808 | 894 | PANTHER | TRANSLATION FACTOR | 1 | 437 | - | - | |
Mtr1g3808 | 894 | Gene3D | Translation factors | 318 | 425 | - | - | |
Mtr1g3808 | 894 | Pfam | AAA+ lid domain | 770 | 806 | IPR041569 | - | |
Mtr1g3808 | 894 | CDD | AAA | 616 | 749 | - | - | |
Mtr1g3808 | 894 | Pfam | ATPase family associated with various cellular activities (AAA) | 618 | 748 | IPR003959 | GO:0005524|GO:0016887 | |
Mtr1g3808 | 894 | PRINTS | GTP-binding elongation factor signature | 9 | 22 | IPR000795 | GO:0003924|GO:0005525 | |
Mtr1g3808 | 894 | PRINTS | GTP-binding elongation factor signature | 68 | 76 | IPR000795 | GO:0003924|GO:0005525 | |
Mtr1g3808 | 894 | PRINTS | GTP-binding elongation factor signature | 88 | 98 | IPR000795 | GO:0003924|GO:0005525 | |
Mtr1g3808 | 894 | PRINTS | GTP-binding elongation factor signature | 104 | 115 | IPR000795 | GO:0003924|GO:0005525 | |
Mtr1g3808 | 894 | PRINTS | GTP-binding elongation factor signature | 146 | 155 | IPR000795 | GO:0003924|GO:0005525 | |
Mtr1g3808 | 894 | Coils | Coil | 457 | 484 | - | - | |
Mtr1g3808 | 894 | ProSiteProfiles | Translational (tr)-type guanine nucleotide-binding (G) domain profile. | 5 | 226 | IPR000795 | GO:0003924|GO:0005525 | |
Mtr1g3808 | 894 | SUPERFAMILY | Translation proteins | 227 | 316 | IPR009000 | - | |
Mtr1g3808 | 894 | Pfam | Elongation factor Tu domain 2 | 244 | 299 | IPR004161 | GO:0005525 | |
Mtr1g3808 | 894 | Pfam | Myosin-like coiled-coil protein | 456 | 502 | IPR026183 | GO:0019905 | |
Mtr1g3808 | 894 | ProSitePatterns | AAA-protein family signature. | 721 | 740 | IPR003960 | GO:0005524|GO:0016887 | |
Mtr1g3808 | 894 | PANTHER | ELONGATION FACTOR 1-ALPHA | 1 | 437 | - | - | |
Mtr1g3808 | 894 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 575 | 799 | IPR027417 | - | |
Mtr1g3808 | 894 | Gene3D | - | 576 | 862 | IPR027417 | - | |
Mtr1g3808 | 894 | SMART | AAA_5 | 614 | 751 | IPR003593 | - | |
Mtr1g3808 | 894 | CDD | EF1_alpha_II | 226 | 315 | - | - | |
Mtr1g3808 | 894 | CDD | EF1_alpha_III | 318 | 421 | - | - | |
Mtr1g3808 | 894 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 3 | 245 | IPR027417 | - | |
Mtr1g3808 | 894 | Pfam | Elongation factor Tu GTP binding domain | 8 | 218 | IPR000795 | GO:0003924|GO:0005525 | |
Mtr1g3808 | 894 | CDD | EF1_alpha | 9 | 222 | - | - | |
Mtr1g3808 | 894 | Pfam | Elongation factor Tu C-terminal domain | 318 | 424 | IPR004160 | - | |
Mtr1g3808 | 894 | ProSitePatterns | Translational (tr)-type guanine nucleotide-binding (G) domain signature. | 61 | 76 | IPR031157 | - | |
Mtr1g3808 | 894 | SUPERFAMILY | EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain | 321 | 424 | IPR009001 | - | |
Mtr1g3808 | 894 | TIGRFAM | EF-1_alpha: translation elongation factor EF-1, subunit alpha | 1 | 428 | IPR004539 | GO:0003746|GO:0005525|GO:0006414 | |
Mtr1g3808 | 894 | Gene3D | - | 1 | 224 | IPR027417 | - | |
Mtr1g3808 | 894 | Coils | Coil | 814 | 834 | - | - | |
Mtr1g3808 | 894 | Gene3D | Translation factors | 225 | 311 | - | - | |
Mtr1g3808 | 894 | Gene3D | - | 750 | 857 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Mtr1g3808 | Mtr-Chr1 | 49627230 | 49636432 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Mtr1g3808 | 1 | 434 | Eukaryotic Initiation Factors Gene Family | AT5G60390 | 79.271 | 0.0 | 717 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mtr1g3808 | K03231 | - | gmx:100801611 | 701.049 |