Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3799 ATGGCTGTTGCCGAAAGTTGCAGCAGCAGTGGGCGCTCAACTTCATTCAATTGTTACAAAGTAGCAAGCATGACCGAAACCATATTGAACGCAAAGCAAACTTCTAATTTGAAAGATCGATACGTTCTTGGGGAGCAGTTGGGTTGGGGACAGTTTGGTGTCATTAGAACATGCTCCGACAGAACGACTGGAGAGGTTTTGGCATGCAAATCAATTGCAAAAGATAGGTTGGTTACTTCCGATGATATGCAGAGTGTTAAACTTGAGATTGAGATCATGGCGAAGTTATCTGGGCACCCAAATGTTGTAGATCTCAAGGCTGTTTATGAAGAGGAAGATTTTGTTCATCTGGTGATGGAACTTTGTGCTGGAGGGGAGCTGTTTCACTTGTTAGAGAAGCATGGTAGGTTTTCTGAATCTGAAGGAAGGGTTCTCTTTCGGCATCTCATGCAGATGGTTTTGTATTGTCATGAAAATGGAATTGTTCACCGAGATTTAAAGCCCGAAAACATTCTCTTAGCAACTAAATCCTTCTCGTCTCCAATTAAATTAGCTGACTTTGGGCTTGCAACCTACATCAAGCCTGGACAGAGTTTGCATGGTTTAGTTGGGAGTCCATTTTATATAGCTCCAGAGGTGTTGGCAGGTGCATATAACCAGGCTGCGGATATTTGGAGTGCAGGTGTTATTCTTTACATTCTACTGAGCGGGATGCCTCCGTTTTGGGGAAAGACAAAGTCACGGATATTTGAAGCTGTTAAGGCTGCTGATTTGAGGTTCCCATCTGAACCTTGGGATCGCATCTCTAAATCTGCTAAGGATTTAATTCGTCGAATGCTCTGCATAGAACACTCTCAAAGGCTCACCGCCCAAGAGGTTTTGGACCATTGCTGGATGGAAAGCGATCCAACAAATCTGGAACAACTAAGTGAACATAAAATCGAAAGTAGTGGAGAGTGGCATGTTGGCGGCGGCTCATTCTCTGCATCGTTTATGTCCAGGAATGAAGACATCAGTTTTGGCGCTGGATCACCTACATGCGATGCTCAATCACCTACATTCACATGCAAATCATCGTTTTCTTCCATTTTCGTGGAACCCGTGACACCTATTTCTGTTTCTGGCGGGTTTTCATTTCGGAGCTCAGGTGGTGGTTCCATTGGTTTGGAGTTTTCTACACCTGTTTCATCAATGCCTAGCTTTGCATTTCTCGGCCCCAGTTCCGTTGTTGAGCAAAATAGTCTCATATTTGAATTCTCGTCTAACACGTCAGAAGTAAATGCAATTGTTAGAGATTCTCCCCTTTCCCTTGGAAATGATGTTAAAGAAAGGGATCACAAGCCTATAGAGACTAAAAGGGCATGTGGAACCAATTGTAACAGAACATTGGGATTCCACAGCAAGAGAAACCGGACAATTGGACTTGGTGAGTGTGAGCAACTTGATCTTGTGGTGACCGAATCCGTCATTCGTTGGTTATCATGCACACAACTTCCTACATCACCAAAATCATCACTTGTCTGTTGA 1527 0.4368 MAVAESCSSSGRSTSFNCYKVASMTETILNAKQTSNLKDRYVLGEQLGWGQFGVIRTCSDRTTGEVLACKSIAKDRLVTSDDMQSVKLEIEIMAKLSGHPNVVDLKAVYEEEDFVHLVMELCAGGELFHLLEKHGRFSESEGRVLFRHLMQMVLYCHENGIVHRDLKPENILLATKSFSSPIKLADFGLATYIKPGQSLHGLVGSPFYIAPEVLAGAYNQAADIWSAGVILYILLSGMPPFWGKTKSRIFEAVKAADLRFPSEPWDRISKSAKDLIRRMLCIEHSQRLTAQEVLDHCWMESDPTNLEQLSEHKIESSGEWHVGGGSFSASFMSRNEDISFGAGSPTCDAQSPTFTCKSSFSSIFVEPVTPISVSGGFSFRSSGGGSIGLEFSTPVSSMPSFAFLGPSSVVEQNSLIFEFSSNTSEVNAIVRDSPLSLGNDVKERDHKPIETKRACGTNCNRTLGFHSKRNRTIGLGECEQLDLVVTESVIRWLSCTQLPTSPKSSLVC* 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3799 508 SMART serkin_6 41 299 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g3799 508 Pfam Protein kinase domain 41 299 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g3799 508 ProSitePatterns Protein kinases ATP-binding region signature. 47 74 IPR017441 GO:0005524
Mtr1g3799 508 SUPERFAMILY Protein kinase-like (PK-like) 38 356 IPR011009 -
Mtr1g3799 508 CDD STKc_CAMK 40 298 - -
Mtr1g3799 508 PANTHER SERINE/THREONINE-PROTEIN KINASE 12 504 - -
Mtr1g3799 508 ProSiteProfiles Protein kinase domain profile. 41 299 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g3799 508 ProSitePatterns Serine/Threonine protein kinases active-site signature. 161 173 IPR008271 GO:0004672|GO:0006468
Mtr1g3799 508 Gene3D Transferase(Phosphotransferase) domain 1 128 322 - -
Mtr1g3799 508 Gene3D Phosphorylase Kinase; domain 1 42 127 - -
Mtr1g3799 508 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 34-LIKE 12 504 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3799 Mtr-Chr1 49547920 49551905 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3799 28 304 EF-hand Containing Proteins AT3G57530 48.014 1.84e-95 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Mtr1g3799 Pkinase 8.1e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3799 - - gmx:100776088 780.785