Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3797 ATGTTTACTATGAATCAATTTTCGGAGTCACATGATCCATGTTCATCATCTTCAGAGAGGTTTCTTGCAGAGACCATGCCAAAGAAGCGTGCAGGGAGGAAGAAGTTCAGAGAAACACGCCACCCTGTGTACCGTGGTGTAAGAAAAAGGGATTCCGGGAAGTGGGTTTGCGAAGTAAGAGAACCTAACAAGAAAACCAGAATTTGGCTTGGAACATTCCCTACACCGGAGATGGCGGCGCGTGCGCATGATGTCGCTGCGATTGCACTGAGAGGAAGGTCTGCTTGTCTTAACTTTGCTGATTCTGCTTGGAAGTTGCCGGTTCCGGCTACGTCGGAAGCAAGGGATATTCAAAAGGCGGCGGCTGAGGCAGCGGAGGCTTTCAGGCCGGAGAGTGTGTTTGAGAATAGTGAAGAGAGGAAGGATAGTGAGCCTTCGTCGACAGTGGCGGTGTCGGAGACGGTGATGGAGCAACGGGAGGAGGAAGAGGATACGGTGCCGGAGTATTTGAGAAACATGGTGCTAATGTCACCGGCACATTACTGGGGAAGTGATTGTGGTGTTGCTGACGTGGAATTTGATGAAACTGAAGTTTCATTGTGGAGTTACTCATTTTAA 618 0.4951 MFTMNQFSESHDPCSSSSERFLAETMPKKRAGRKKFRETRHPVYRGVRKRDSGKWVCEVREPNKKTRIWLGTFPTPEMAARAHDVAAIALRGRSACLNFADSAWKLPVPATSEARDIQKAAAEAAEAFRPESVFENSEERKDSEPSSTVAVSETVMEQREEEEDTVPEYLRNMVLMSPAHYWGSDCGVADVEFDETEVSLWSYSF* 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3797 205 PRINTS Ethylene responsive element binding protein signature 44 55 IPR001471 GO:0003700|GO:0006355
Mtr1g3797 205 PRINTS Ethylene responsive element binding protein signature 66 82 IPR001471 GO:0003700|GO:0006355
Mtr1g3797 205 SMART rav1_2 43 106 IPR001471 GO:0003700|GO:0006355
Mtr1g3797 205 MobiDBLite consensus disorder prediction 1 37 - -
Mtr1g3797 205 MobiDBLite consensus disorder prediction 132 146 - -
Mtr1g3797 205 MobiDBLite consensus disorder prediction 131 164 - -
Mtr1g3797 205 ProSiteProfiles AP2/ERF domain profile. 43 100 IPR001471 GO:0003700|GO:0006355
Mtr1g3797 205 SUPERFAMILY DNA-binding domain 43 102 IPR016177 GO:0003677
Mtr1g3797 205 CDD AP2 44 102 IPR001471 GO:0003700|GO:0006355
Mtr1g3797 205 Gene3D AP2/ERF domain 43 101 IPR036955 GO:0003700|GO:0006355
Mtr1g3797 205 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 7 203 IPR045277 GO:0003700
Mtr1g3797 205 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 7 203 - -
Mtr1g3797 205 MobiDBLite consensus disorder prediction 1 22 - -
Mtr1g3797 205 Pfam AP2 domain 42 92 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3797 Mtr-Chr1 49533617 49534641 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3797 7 203 AP2-EREBP Transcription Factor Family AT5G51990 53.810 1.35e-65 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Mtr1g3797 AP2 3.2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3797 - K09286 aprc:113872706 284.263
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3797 1 49533617 49534641 Mtr5g0326 5 3045953 3047020 ECH
Mtr1g3797 1 49533617 49534641 Mtr1g3797 1 49533617 49534641 ECH
Mtr6g1542 6 27136180 27137234 Mtr1g3797 1 49533617 49534641 PCT