Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3796 ATGCTTAGTTCCTACCTACAACAACAACATAAACATTTCACTTCTTTCGTCATGGATGGCACCAACAACAACACTTCATCGGTGCCACCACCAATACAACCTCCTGATGCATCATCAGCACCAACAACTCCTTCATCTTCTCCGGCGACTACCGGAGTCGCAGGAAGATACCGTGGAACCCGTTGTAGGAGTGGTAAATGGGTATCAGAGATACGTGAGCCACGTAAAACAAAACGCATTTGGTTAGGAACATACCCTACTGCTGAAATGGCAGCTGCTGCTTATGATGTTGCAGCTCTTGCTTTAAAAGGACCTGATACTACTCTTAACTTTCCCAATTCAATACTATCTTACCCTATTCCTGCTTCATTGTCTTCAACTGATATTCGTGCTGCTGCTGAAGCTGCTGCACAAACCAGAATCATGAGACCAGCACAACAAGATCAACAACAACAAAACCCTTCAGCTTTTAGTTTTGAGGGGTCTTCTTCAAGTAGTGGAATATTGCAACAACAACAAGGTCATCATCATGAATATATTGATGAAGATGAGTTGTTGAATATGCCAAGTTTGTTAGATGATATGGCTAGAGGAATGCAGTAG 603 0.4262 MLSSYLQQQHKHFTSFVMDGTNNNTSSVPPPIQPPDASSAPTTPSSSPATTGVAGRYRGTRCRSGKWVSEIREPRKTKRIWLGTYPTAEMAAAAYDVAALALKGPDTTLNFPNSILSYPIPASLSSTDIRAAAEAAAQTRIMRPAQQDQQQQNPSAFSFEGSSSSSGILQQQQGHHHEYIDEDELLNMPSLLDDMARGMQ* 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3796 200 MobiDBLite consensus disorder prediction 17 57 - -
Mtr1g3796 200 MobiDBLite consensus disorder prediction 39 53 - -
Mtr1g3796 200 CDD AP2 56 114 IPR001471 GO:0003700|GO:0006355
Mtr1g3796 200 MobiDBLite consensus disorder prediction 142 173 - -
Mtr1g3796 200 SMART rav1_2 56 118 IPR001471 GO:0003700|GO:0006355
Mtr1g3796 200 Pfam AP2 domain 61 104 IPR001471 GO:0003700|GO:0006355
Mtr1g3796 200 ProSiteProfiles AP2/ERF domain profile. 49 112 IPR001471 GO:0003700|GO:0006355
Mtr1g3796 200 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF026 50 199 - -
Mtr1g3796 200 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 50 199 - -
Mtr1g3796 200 MobiDBLite consensus disorder prediction 142 182 - -
Mtr1g3796 200 Gene3D AP2/ERF domain 55 114 IPR036955 GO:0003700|GO:0006355
Mtr1g3796 200 SUPERFAMILY DNA-binding domain 57 114 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3796 Mtr-Chr1 49514453 49515836 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3796 51 199 AP2-EREBP Transcription Factor Family AT5G52020 50.932 5.11e-38 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mtr1g3796 AP2 2.2e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3796 - - mtr:MTR_1g101550 333.569
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3796 1 49514453 49515836 Mtr6g1554 6 27439171 27440656 ECH
Mtr1g3796 1 49514453 49515836 Mtr1g3796 1 49514453 49515836 ECH