Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3794 ATGAAAGCTATTTTCTGCGGAAATTTTGAATATGATTGCCGGGAGTCTGAGCTGGAGCGGCTTTTTAGAAGATATGGGAAGGTTGATAGGGTGGATATGAAGGCTGGATTTGCTTTTATCTATATGGAAGATGAGAGAGATGCTGAGGCTGCAATCCGTGCTCTTGATCGGATAGAATTTGGTCGAAAGGGGCGCAGGCTTCGTGTTGAATGGACGAAGCAAGAACGTGGTGTCAGAAGGCCTGCTGAGCGTCCAAAAAGATCTTCAGCTAATGCGAGACCATCGAAGACCTTATTTGTAATTAATTTTGATACATACCAGACCAGAACAAGGGACTTGGAGAGGCACTTTGAGCCATATGGTAAGATAGTCAGTGTGAGGATCAGAAAGAATTTCGCGTTTGTTCAGTATGAATCAGAAGATGATGCTTGCAAAGCACTGGAAGCTACAAATAACAGCAAATTGATGGATCGGGTTATTTCAGTTGAATTCGCTGCTAGAGATGATGATAGGCGAAATGGACATAGTCCAGATAGAGGCCGTGATCGTCAACGTGACAGAAGCCGTGATGGAAGGCGATCACCCAGTCCCTATCGTCGAGAAAGGGGTAGTCCTGATTATGGTCGTGGGCCTAGTCCATATAAGAGGGAGAGGAGCAGCCCTGACTATGGGCGTGGCAACAGCCGTAGTAGAAGCCCCCATCGAAGGGAGCGAGGTAGTCCTGCTTATGGGCGTAGAAACCCTAGTCCTTACAGAAGGGAGAGGGATGGTGCTGAGGCTGTTCGCGACACCAGCCGCAGTCCTTATCATAAAGAGCGGCGGAGAACTGACCGATCTCGGTCCCATAGTCTTGAAGAAGGAGAGAGGATAGAACCTCAAAAAGGTCATGGATCTGACCCTAGTCCTTATGGTACTGTGAAGGATAGCCCTGAAAATGGCCATGACCGGAGGCGTAGTCCTGATGCAAAAAGAAACCCCAGCCCATTCAATGGTTCTAGAGGGAGCCCTAGTCCTGATGCAAAAGGGAACCCCAGCCCATACAATGATTATGGAGGTAGCCCAAATACTATGCCGGAACCCAGGGACAGTCCCAACTATGGTGGTCCTGAAAGTCCCATGAATGAACAATATCGCAGTCAGAGCCAGTCACCCCCTGCAGAAGAATGA 1167 0.4859 MKAIFCGNFEYDCRESELERLFRRYGKVDRVDMKAGFAFIYMEDERDAEAAIRALDRIEFGRKGRRLRVEWTKQERGVRRPAERPKRSSANARPSKTLFVINFDTYQTRTRDLERHFEPYGKIVSVRIRKNFAFVQYESEDDACKALEATNNSKLMDRVISVEFAARDDDRRNGHSPDRGRDRQRDRSRDGRRSPSPYRRERGSPDYGRGPSPYKRERSSPDYGRGNSRSRSPHRRERGSPAYGRRNPSPYRRERDGAEAVRDTSRSPYHKERRRTDRSRSHSLEEGERIEPQKGHGSDPSPYGTVKDSPENGHDRRRSPDAKRNPSPFNGSRGSPSPDAKGNPSPYNDYGGSPNTMPEPRDSPNYGGPESPMNEQYRSQSQSPPAEE* 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3794 388 SUPERFAMILY RNA-binding domain, RBD 3 81 IPR035979 GO:0003676
Mtr1g3794 388 SMART rrm1_1 97 163 IPR000504 GO:0003723
Mtr1g3794 388 SMART rrm1_1 3 70 IPR000504 GO:0003723
Mtr1g3794 388 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 98 160 IPR000504 GO:0003723
Mtr1g3794 388 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 62 IPR000504 GO:0003723
Mtr1g3794 388 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 96 167 IPR000504 GO:0003723
Mtr1g3794 388 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 4 210 - -
Mtr1g3794 388 MobiDBLite consensus disorder prediction 325 352 - -
Mtr1g3794 388 MobiDBLite consensus disorder prediction 369 388 - -
Mtr1g3794 388 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 74 IPR000504 GO:0003723
Mtr1g3794 388 MobiDBLite consensus disorder prediction 167 388 - -
Mtr1g3794 388 Gene3D - 1 84 IPR012677 -
Mtr1g3794 388 Gene3D - 85 181 IPR012677 -
Mtr1g3794 388 MobiDBLite consensus disorder prediction 309 323 - -
Mtr1g3794 388 PANTHER BNAC08G47240D PROTEIN 4 210 - -
Mtr1g3794 388 MobiDBLite consensus disorder prediction 167 295 - -
Mtr1g3794 388 SUPERFAMILY RNA-binding domain, RBD 81 176 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3794 Mtr-Chr1 49497883 49502301 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3794 4 172 Eukaryotic Initiation Factors Gene Family AT1G49760 22.513 5.68e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3794 K12893 - gmx:100796509 561.222
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3794 1 49497883 49502301 Mtr1g3794 1 49497883 49502301 ECH