Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3786 ATGGATGGTGATCATAACAAGTTAGGTAATGTGCATGTAGAAAATGTTGATGTTGGACTTGAAACATCCAATAGTTTGGACTTGAATGTGGAGCAAAATAGTTGCAGCCCAAATGTTCTTCACGCTAATGGCTCTCAAACTCAATCTGGTAGTGCATCAGCAAATGGCGGCTTTGTCAACACAGTGTTGGGCATCGGTACGTTATTTGAGTCTGATGAACATGCGTATAGATTCTATAACAAGTATGCTAGATTGATGGGGTTCAATGTTAGAAAAGATTGGATTAATAGGAGTAAGGTACATGGTATGGTGGTTTCTAGGAAATTTACCTGCTCCAGAGAGGGATATCGTAGGAAAGACAAGAGAGATTTTACTGTGAAGAAACATCGGAAGGAGACGAGAACTGGCTGTTTGGCACACATGATCGTTACTCGTCAACAAGATGGAAAATACCAGGTTACGCATTTTGAAGCACAACATAATCATGATGACATAAATCCAATCAATTCTAACATGTTGTTACTAGAGTTGCAAAATGAATTTTGTGTTGCTCAAGCTGTGGAAGTTGACTCATATCATAATTTGGGACCCAAATCTAGCTCAGCGTTAACTACGATGAATACAAAATTAGGTGCACGTGATTCTCTTGATCAACTTTCCATGAATTATGACAATTATCTTCATTCTGTAAGGGAAAGAGATATGGGTAAAGGAGAAGCTGGGCGTTTGATGGGTTATTTTCAAAGGCAACATTTTGAAAATCCAACATTTTTTTATGCCGTACAGCTTGATGTTGATGACAAGGTAACCAATCTTTTCTGGGCTGATGACAATATGGTGGTAGATTACGATCATTTTGGGGATGTTGTTGGTTTGGATACAACTTGCAGAACAAACAAAGCTTTTCGGCCATTTGTACAGTTTTTAGGTGTTAATCATCACAAACAAGTATTAATATTTGCTGCTGCTTTTTTGTATGATGAGACCATCGAATCATTTAATTGGCTGTTTCGAACTTTCATTGGCGCAATGTCTGGGAAAAAGCCTAAGGCCATTATCACAGAACAAGATGCTGCAATCATCGAAGCAATCAATGCGGTTTTACCTGAAACAAACCGCTATACATGTGTTTGGCAGATGTATGAGAACACTCTTAAACATCTCAGCCATTTTGTTAAAGATGTTGAATCCTTTGCAAATGATCTAAGGAGTTGTATATATGACCCCAAGGATGAGGAAGAATTTACTCATGCTTGGGGGGTTATGCTGGAGAAATATAATCTCCAGCGAAATGAATGGTTGAGATGGATGTATAGAGAAAGGGAGAAATGGGCTGTTTGCTTTGGTCAGAATAGATTTTTTGTAGATGTCAAAGGCTTTCATTTAGGTGAGATTTTGTCTCACAAGCTTAGAAGCTATCTAAATCCCGACCTTGATGTAGTTCAATATCTTAACCATTTTGAAAGGATAGTGGAGGAGCAACGATATAAAGAAATAGAAGCTAGTGATGAAATGAAGGGATGTCTTCCAAAGCTAATGGGTAATGTGGTTGTGTTGAAACATGCTAGTGTTGCTTATACTCCAAGAGCATTTGAAGTATTTCAGCAACGATATGAGAAGTCTTTGAATGTTATTGTCAACCAGCACAAAAGAGATGGATATTTGTTTGAGTATAAAGTTAATACATATGGGCATGCTAGACAGTACACTGTCACCTTCAGTTCTTCAGATAATACAGTTGTCTGCAGTTGTATGAAGTTTGAGCATGTTGGTTTTCTTTGTAGCCATGCACTAAAAGTTCTTGATAATAGAAACATAAAAGTAGTTCCATCTCGATACATCTTGAAGAGATGGACAAAAGATGCAAGGTTGGGTAATATCAGGGAGATTAAGCAATTTAAAATGCAAGATAACCCTAAGATGGTTGTAGCAAGCTGTTACAAAGATTTATGCCACAGACTTGTCAAGTTATCGGCAAGAGCTTCTGAATCTGTGGAGGCTTATCAGTTTGCTGTGAGGCAACTTGATGAAGTTATGGAAGGAGTGCAGAAAATCTTGATATTGAAAAGCGAGGAAGCTCAAGTTATCACCTCAAATAGTATTCATGTAGATGCTTCAGAAAGTGAGCCTGCAGTGATCTTTCTGAATGGACATGCGACTGAGGATCAGGATGAAAGTAACAGAGTAAGCGAAGAAATTGACAGGACCGCTACACCGGATAGGTGCCAAATAACGGTGAATTATAGTCAAACTGATTCAGATAGGATTTTAAATGTAGAACCTTCTTCAAATACTGTTGTCTGCATTTCAAGCCCCCCATCTCCATATGTTTCATCTCAACCAAATCTCCTTTTGCAGGGCTTATTCGGTTTTGAAACCAATGAAGTGGTTCAATGCATGTATGAACGGCCTGATCTTGTGTTGGATCATCAATCTAATACTAACCTGTTCCAACCGCCAATTTCTAACCAACACAGTTCTCCATGCCTTTCTCAACTATCGCAGGAGCCTATAATCCAAAACGCACACCATGAGTCCGTACCAAGCAATAATCAGATGCAACAGGGTATGGATCTTGATATCCAAAATCCTCATTCAGAATCTTGTATCCTGCTGTGTGACCATAGATACCGAAGTTCTGACTCTGCATAA 2652 0.3869 MDGDHNKLGNVHVENVDVGLETSNSLDLNVEQNSCSPNVLHANGSQTQSGSASANGGFVNTVLGIGTLFESDEHAYRFYNKYARLMGFNVRKDWINRSKVHGMVVSRKFTCSREGYRRKDKRDFTVKKHRKETRTGCLAHMIVTRQQDGKYQVTHFEAQHNHDDINPINSNMLLLELQNEFCVAQAVEVDSYHNLGPKSSSALTTMNTKLGARDSLDQLSMNYDNYLHSVRERDMGKGEAGRLMGYFQRQHFENPTFFYAVQLDVDDKVTNLFWADDNMVVDYDHFGDVVGLDTTCRTNKAFRPFVQFLGVNHHKQVLIFAAAFLYDETIESFNWLFRTFIGAMSGKKPKAIITEQDAAIIEAINAVLPETNRYTCVWQMYENTLKHLSHFVKDVESFANDLRSCIYDPKDEEEFTHAWGVMLEKYNLQRNEWLRWMYREREKWAVCFGQNRFFVDVKGFHLGEILSHKLRSYLNPDLDVVQYLNHFERIVEEQRYKEIEASDEMKGCLPKLMGNVVVLKHASVAYTPRAFEVFQQRYEKSLNVIVNQHKRDGYLFEYKVNTYGHARQYTVTFSSSDNTVVCSCMKFEHVGFLCSHALKVLDNRNIKVVPSRYILKRWTKDARLGNIREIKQFKMQDNPKMVVASCYKDLCHRLVKLSARASESVEAYQFAVRQLDEVMEGVQKILILKSEEAQVITSNSIHVDASESEPAVIFLNGHATEDQDESNRVSEEIDRTATPDRCQITVNYSQTDSDRILNVEPSSNTVVCISSPPSPYVSSQPNLLLQGLFGFETNEVVQCMYERPDLVLDHQSNTNLFQPPISNQHSSPCLSQLSQEPIIQNAHHESVPSNNQMQQGMDLDIQNPHSESCILLCDHRYRSSDSA* 884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3786 883 Pfam MULE transposase domain 289 383 IPR018289 -
Mtr1g3786 883 PANTHER PROTEIN FAR1-RELATED SEQUENCE 12-LIKE 9 758 - -
Mtr1g3786 883 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 9 758 IPR031052 GO:0006355
Mtr1g3786 883 SMART 26again6 580 607 IPR006564 GO:0008270
Mtr1g3786 883 Pfam SWIM zinc finger 569 603 IPR007527 GO:0008270
Mtr1g3786 883 ProSiteProfiles Zinc finger SWIM-type profile. 569 605 IPR007527 GO:0008270
Mtr1g3786 883 Pfam FAR1 DNA-binding domain 77 163 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3786 Mtr-Chr1 49421195 49425245 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Mtr1g3786 MULE 4.6e-24 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3786 - K17604 gmx:100809803 1295.41