Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3783 ATGGGGTTTGAGAGTGTGAACAGTTCCTGTAAGGTTGCAAGACTTGTCACTGATATTTCTATACCCTTTTCTAGTTCAATGCAAAATCCATCTACTTTCTTCTCAACTCAAAGAAAAATGGAGGGGCAGAGTGAGATTGGTCTCACTGGTGATAGTTTAGATACTGGTCTGCTTGGGAGAATGAGAGAAGATGAGTATGAAAGCCGGTCCGGAAGCGATAACTTTGATCTTGAAGGATTATCTGGTGATGATCAGGATGGTGGTGATGATGGTCAGCGCAAGAGGAAGAAGAGATACCACAGACACACTCCTAATCAAATTCAAGAGCTTGAATCTTTCTTCAAGGAGTGTCCTCATCCTGATGAAAAACAAAGGTTGGATCTTAGCAAGAGACTTGGCTTGGAAAATAAACAAGTCAAATTCTGGTTTCAGAATCGTCGAACCCAAATGAAGACTCAACTGGAAAGGCATGAGAACATAATGCTTAGGCAGGAAAATGACAAGCTAAGAGGGGAGAATAGCATGATGAAAGAAGCAATGGTGAATCCAATATGTAACAACTGTGGTGGACCAGCAATTCCTGGCCAAATATTGTTTGAAGAGCACCAGATTAGAATTGAAAACGCTCGTCTAAAGGATGAATTGAACCGTATATGCGCCTTAACAAACAAGTTCCTTGGCAAACCAATATCATCATTGGCTAATCCCATGGCTCTACCAACCTCAAATTCTGGTCTGGAACTTGGTATTGGAAGGAATGGTTTTGGTGGTGGTTCAAGCTCCCTCGGCAATCCTTTGCCAATGGGACTTGATCTTGGAGATGGTCGCTCAATGCCTGGTATTAGTTCACCAATGGGATTGATGGGAAGTAGTAGTGATGTTCAGCTTGAGAGATCGGCTCTAATAGATCTAGCATTGGCTGCTATGGATGAATTATTAAAGATGGCTCAGACAGATAGTCCTGTTTGGATTAAGGGTTTGGATGGAGAGAGAGACATGTTGAATCAAGAAGAGTATGCACGGTTGATTTCTTCTTGTATTGGTCCTAAACCCGCTGGCTTTGTCACTGAAGCTACGAGAGATACTGGGATAGTAATAATCAACAGTTTAGCACTTGTGGAAACTTTGATGGATGCGAATCGATACGCAGATATGTTTCAGTCTATGATTGCTAGATCTGCCAACCTTGATGTTTTATCTGGTGGAATCGGTGGAACCAGAAATGGTGCTATACATTTGATGCATACCGAGGTTCAATTGCTCTCACCACTAGTCCCGGTTCGTCAAGTGAGAATCCTTCGGTTCTGTAAGCAGCATGCAGAAGGTGTATGGGCAGTGGTTGATGTTTCTGTTGAGATTGGTCATGATCCTTCTAATGCACAACCATTCATAAGCTGCAGAAGACTTCCTTCTGGCTGTATTGTGCAGGATATGCCAAATGGTTACTCCAAGGTCACTTGGATTGAGCACTGGGAGTATGATGAGAGTATTGTTCACCAACTCTATCGTCCGTTGCTCATTTCCGGTTTTGGATTTGGCGCTCATAGATGGATCGCCACCCTCCAAAGGCAGTGTGAAGGCTTGGCTATCCTCATGTCCTCTTCCATCTCAAATGATGATCACACCGCCTTGAGCCAAGCTGGTCGAAGAAGCATGTTGAAGCTGGCACAACGTATGACCAACAACTTCTGTTCCGGGGTTTGTGCTTCATCTGCTAGAAAATGGGACAGCCTCCAAATGGGGACTCTGAGTGATGACATGAGAGTTATGACTAGGAAAAATGTTGATGACCCTGGCGAGCCTCCCGGTATTGTGCTCAGCGCTGCAACATCTGTTTGGATGCCCGTTTCACGACAAAGACTGTTTGATTTTCTGCGTGATGAAAGGCTTAGAAGCGAGTGGGACATTTTGTCTAATGGTGGACCCATGCAAGAGATGGTTCACATTGCCAAAGGACAAGGGCAAGGAAATTGTGTTTCTCTCCTTCGTGCTAATGCTGTTAATGCGAATGATAGCAGCATGTTGATTCTGCAAGAAACTTGGATGGATACATCTTGCTCAGTGGTGGTGTATGCACCAGTTGACGGGCAATCATTGAATGTGGTGATGAGTGGTGGAGATTCTGCATATGTTGCACTCCTGCCTTCAGGCTTTGCCATTGTTCCTGATGGCAATGATCCCTCTGGCTATGGCATGTCAAATGGTACATTACAGAAAGGTGGTGCTAGCGATGGTGGTGGAAGTTTGCTCACAGTTGGATTCCAAATTCTGGTGAATAGCCTTCCAACTGCTAAGCTCACAATGGAGTCAGTTGATACTGTTAATAATCTCATCTCATGCACCATTCAGAAGATCAAAGCTGCACTTAGAGTTGCATAA 2379 0.4418 MGFESVNSSCKVARLVTDISIPFSSSMQNPSTFFSTQRKMEGQSEIGLTGDSLDTGLLGRMREDEYESRSGSDNFDLEGLSGDDQDGGDDGQRKRKKRYHRHTPNQIQELESFFKECPHPDEKQRLDLSKRLGLENKQVKFWFQNRRTQMKTQLERHENIMLRQENDKLRGENSMMKEAMVNPICNNCGGPAIPGQILFEEHQIRIENARLKDELNRICALTNKFLGKPISSLANPMALPTSNSGLELGIGRNGFGGGSSSLGNPLPMGLDLGDGRSMPGISSPMGLMGSSSDVQLERSALIDLALAAMDELLKMAQTDSPVWIKGLDGERDMLNQEEYARLISSCIGPKPAGFVTEATRDTGIVIINSLALVETLMDANRYADMFQSMIARSANLDVLSGGIGGTRNGAIHLMHTEVQLLSPLVPVRQVRILRFCKQHAEGVWAVVDVSVEIGHDPSNAQPFISCRRLPSGCIVQDMPNGYSKVTWIEHWEYDESIVHQLYRPLLISGFGFGAHRWIATLQRQCEGLAILMSSSISNDDHTALSQAGRRSMLKLAQRMTNNFCSGVCASSARKWDSLQMGTLSDDMRVMTRKNVDDPGEPPGIVLSAATSVWMPVSRQRLFDFLRDERLRSEWDILSNGGPMQEMVHIAKGQGQGNCVSLLRANAVNANDSSMLILQETWMDTSCSVVVYAPVDGQSLNVVMSGGDSAYVALLPSGFAIVPDGNDPSGYGMSNGTLQKGGASDGGGSLLTVGFQILVNSLPTAKLTMESVDTVNNLISCTIQKIKAALRVA* 793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3783 792 CDD START_ArGLABRA2_like 298 526 - -
Mtr1g3783 792 CDD homeodomain 95 153 IPR001356 GO:0003677
Mtr1g3783 792 Gene3D - 84 168 - -
Mtr1g3783 792 SUPERFAMILY Homeodomain-like 79 153 IPR009057 -
Mtr1g3783 792 SUPERFAMILY Bet v1-like 295 527 - -
Mtr1g3783 792 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 36 790 IPR042160 -
Mtr1g3783 792 SUPERFAMILY Bet v1-like 554 786 - -
Mtr1g3783 792 MobiDBLite consensus disorder prediction 57 72 - -
Mtr1g3783 792 Coils Coil 147 167 - -
Mtr1g3783 792 ProSiteProfiles START domain profile. 294 530 IPR002913 GO:0008289
Mtr1g3783 792 Pfam Homeodomain 96 151 IPR001356 GO:0003677
Mtr1g3783 792 ProSitePatterns 'Homeobox' domain signature. 128 151 IPR017970 GO:0000981|GO:0006355
Mtr1g3783 792 MobiDBLite consensus disorder prediction 36 105 - -
Mtr1g3783 792 Pfam START domain 304 526 IPR002913 GO:0008289
Mtr1g3783 792 ProSiteProfiles 'Homeobox' domain profile. 93 153 IPR001356 GO:0003677
Mtr1g3783 792 Gene3D - 351 519 IPR023393 -
Mtr1g3783 792 SMART START_1 303 527 IPR002913 GO:0008289
Mtr1g3783 792 SMART HOX_1 94 157 IPR001356 GO:0003677
Mtr1g3783 792 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 36 790 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3783 Mtr-Chr1 49388050 49393256 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3783 1 789 Homeobox Transcription Factor Family AT3G61150 58.068 0.0 902
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Mtr1g3783 START 1e-46 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3783 K09338 - gmx:100785102 1234.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3783 1 49388050 49393256 Mtr6g1472 6 24564993 24570202 ECH
Mtr5g1209 5 12317226 12324304 Mtr1g3783 1 49388050 49393256 ECH
Mtr1g3783 1 49388050 49393256 Mtr1g3783 1 49388050 49393256 ECH