Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3781 ATGGCTTTTCCTTTCAATATTCTTCTACTCTCATACCTTCTCATTTTCCACCTTTCTTACGCCATTAACGACCAAAACCCAGAAAAACTTTCCCTCCTTTCTTTCAAAGGGTCACTTCAAAATTCACACTTTCTTTCTTCATGGCACAATACTACTTCACACTGTAAATGGGTTGGTGTAACGTGTCAACTCGGTCGAGTTACCGCACTCTCTCTTCCTTCTTGTTCCCTCAGAAGCAATATCTCTTCTTCTCTTTCCACTCTTTCCTCTCTCACCTCTCTCACCTTACTCAACCTTGAAGATAATCAGTTTTCCGGTGAACTCCCCGGTGAGCTTGGTGGGTTGTTTCAGCTAGAAACTCTAAGCCTCGGTTCAAACTCTTTCGCCGGAAAAATTCCACCGGATTTTGGTTTTTTAAATAAACTACGTACACTTGATCTTTCCGGTAATGCACTCGCCGGAGATATACCGGAGAGTTTTGGAAACTTGACAAAGCTTCAGTTTTTAGACCTTAGCAATAACATACTTTCAGGTTCTCTTCCGTTAAGTCTTTTTACCGGAACTGTGAATTTGATTTCTATTGATATTTCAAACAACTCGTTTTCCGGCGAAATTCCACCGGAGATTGGGAATTGGAAGAATTTGACTGCACTTTACGTTGGGATGAACAAGTTGTCTGGTACATTGCCTAAGGAAATTGGAGAGCTTACAAAGCTTGAAGTTCTGTATTCGCCTTCTTGTTTGATTGAGGGTCCATTACCTGAAGAAATGGAAAACCTTGAATTGTTGACAAAGCTCGATCTTTCTTATAACCCTTTAAGGTGTTCTATTCCAAAGTTTATTGGGAAGTTGAAAAATTTGGAAATTTTGAACCTTGTTTTTTCTGAGCTTAATGGGTCAGTTCCATCCGAGCTTGGAAATTGTTCAAATTTGACTAATGTGATGCTTTCTTTTAATTCATTATCTGGGTCATTGCCTCAAGAGCTTTCTATGCTTCCTATTAAGACATTTTCAGCTGAAAAGAATCTTCTTCATGGTCCTTTGCCTTCTTGGCTTGGGAAGTGGAGTAATATTGATTCTCTTTTGCTTTCGGCAAACCGGTTTTCAGGTGTGATTCCACCTGAGCTTGGGAATTGTTCTGTGATGGAGCATCTCAGTTTGAGTAGTAATTTGTTGACAGGCTCTATACCTGAGGAGCTTTGTAACGCCGCATCGATGTCGGAGATTGATCTTGATGATAACAACCTTAGTGGTACAATTGAGAAAGCTTTTGTGAATTGTAAGAACCTTACTCAATTGGTTTTGATGAATAATCAGATTGTTGGTTCTATACCACAGTACCTTTCTGAGCTTCCTTTGATGGTGCTGGACTTGGACAACAACAATTTCAGTGGACAGATACCTTGTAGTTTGTGGAATTTATCAACACTGATGGAATTTTCTGCTGCTAATAACCACTTGGAGGGTTCTCTTCCTGTGGAGATTGGAAATGCAGTTATTCTACAAAGGCTTGTTCTTAGCAACAATCGTTTGACAGGTACTATTCCTAAGGAAATTGGAAGTCTTTTAAGTCTTTCAGTTTTCAATTTGAATGGAAATATGCTTGAAGGAAACATTCCAGCTGAGCTTGGTGATTGTATTTCACTCACTACATTGGACCTTGGAAACAATCAACTCAATGGCTCAATTCCTGAAAAATTGGTGGAACTAAGTGAATTACAGTGCTTAGTTCTTTCTCACAATAATCTGTCTGGGACTATTCCTTCCAAGGAATCTTCGTATTTTCGACAACTTACTGTACCTGATTTGAGCTTTGTTCAACACCTTGGTGTGTTTGATCTTTCTCATAATAGATTGTCTGGCACCATACCTGATGAATTGGGGAGCTGTGTAGTGGTTGTGGATCTATTGCTTAGCAACAACATGCTTTCAGGGAGCATTCCAAGATCACTCTCGCGCTTGACAAATCTAACAACTTTGGATTTGTCTGGAAACTTGTTGTCAGGTTCCATTCCACCGGAGCTTGGAGATGCTGTCACACTCCAAGGTTTCTATTTGGGACAGAATCAACTCTCAGGTACCATCCCTGGAAATTTTGGAAAATTGACTGCTTTGGTGAAGCTGAATTTAACAGGAAACATGCTGTATGGTCCTATTCCAACTAGTTTTGGGAACATGAAGGAATTGACTCACTTGGACTTGAGCTATAATGAACTCAGCGGTGAGCTACCGTCCATTATGTCGGGTGTGCAAAGCCTTGTTGGGCTTTACGTGCAGAATAACAAGCTTTCAGGCCATGTTGGGGAGCTTTTCTCAAATTCCATGACATGGAGGATTGAGACAATGAATCTAAGTTGCAATTGCTTTGATGGAAACTTGCCATGGTCTTTAGGAAATCTTTCCTACTTGACGATTTTGGATCTTCACCGAAATCTGTTGACTGGAGAGATTCCTTTGGACCTTGGGAATCTAATACAACTTGTTTATTTTGATGTTTCAGGCAATCAATTATCTGGAAAGATTCCAGAGAAGTTATGCAGCCTAGTTAATCTAAATTACCTTGATTTCTCTCAAAACAGATTGGAAGGGCCTATTCCAATAACTGGTATTTGCCAAAACCTATCCGAAGTTAGATTTTTGGGAAACAGAAACCTTTGTGGGCAGATGTTGGGTACAAATTGTGAGGTCAAAAGCATTGGTAGATATTCATTGTTTAATGTATGGAGGCTTGGTGGAATTGCCATCGCAGTCATATTAGTAACCTTGATCTTTGCTTTTGTGCTGCATAGATGGATCAGCAGGAAGCAAAATGATCCTGAGGACCTGGAGGATCGGAAACTTAACAGTTATGTTGATCAGAATCTTTACTTCTTGAGCAGTAGCAGATCAAAGGAACCTTTGAGTATCAATGTAGCAATGTTTGAGCAGCCTCTTCTGAAATTAACTTTAGTTGATATCCTCAAAGCTACTGAGAATTTCAGCAAGACAAACATAATTGGAGATGGAGGTTTCGGAACTGTGTACAAGGCCACTTTACCAAATGGAAGAACAGTTGCTGTGAAGAAGCTTAGCGAAGCTAAAACGCAGGGTCATCGTGAGTTCATGGCTGAAATGGAAACCTTAGGCAAGATAAAGCATCAAAACCTAGTTGGATTGCTTGGTTATTGCTCAATGGGTGAGGAGAAACTCCTTGTTTATGAATACATGGTAAATGGAAGCTTAGATCTCTGGTTGAGAAACAGAACCGGGGGACTCGAAATCCTCAATTGGAACAAACGTTACAAAATTGCGACGGGTGCAGCAAAAGGACTAGCTTTCCTTCATCACGGTTTCATACCTCACATCATTCACAGGGATGTTAAAGCTAGCAACATTTTACTAAATGTAGATTTTGAGCCGAAAGTCGCCGATTTTGGACTAGCAAGATTGATCAGTGCATGTGAGACTCATATCAGCACTGATATTGCTGGAACATTTGGTTACATTCCACCAGAGTATGGACAGAGTGGAAGATCAACAACAAGAGGCGATGTCTACAGTTTCGGGGTCATTTTACTTGAATTGGTGACTGGAAAAGAGCCGACAGGACCAGATTTCAAAGAGATTGAAGGTGGAAACTTGGTTGGATGGGTTGGTCAGAAGATCAAGAAGGGTCAAGCTGCTGATGTTCTTGATCCAACAGTTCTCGACGCGGACTCTAAGCAGATGATGCTTCAAATGCTGCAGATTGCTTGTGTATGCCTCTCTGATAATCCCGCTAACAGGCCTACCATGTTTCAAGTGCACAAATTCTTGAAGGGGATGAAAGGAGATTAG 3816 0.4062 MAFPFNILLLSYLLIFHLSYAINDQNPEKLSLLSFKGSLQNSHFLSSWHNTTSHCKWVGVTCQLGRVTALSLPSCSLRSNISSSLSTLSSLTSLTLLNLEDNQFSGELPGELGGLFQLETLSLGSNSFAGKIPPDFGFLNKLRTLDLSGNALAGDIPESFGNLTKLQFLDLSNNILSGSLPLSLFTGTVNLISIDISNNSFSGEIPPEIGNWKNLTALYVGMNKLSGTLPKEIGELTKLEVLYSPSCLIEGPLPEEMENLELLTKLDLSYNPLRCSIPKFIGKLKNLEILNLVFSELNGSVPSELGNCSNLTNVMLSFNSLSGSLPQELSMLPIKTFSAEKNLLHGPLPSWLGKWSNIDSLLLSANRFSGVIPPELGNCSVMEHLSLSSNLLTGSIPEELCNAASMSEIDLDDNNLSGTIEKAFVNCKNLTQLVLMNNQIVGSIPQYLSELPLMVLDLDNNNFSGQIPCSLWNLSTLMEFSAANNHLEGSLPVEIGNAVILQRLVLSNNRLTGTIPKEIGSLLSLSVFNLNGNMLEGNIPAELGDCISLTTLDLGNNQLNGSIPEKLVELSELQCLVLSHNNLSGTIPSKESSYFRQLTVPDLSFVQHLGVFDLSHNRLSGTIPDELGSCVVVVDLLLSNNMLSGSIPRSLSRLTNLTTLDLSGNLLSGSIPPELGDAVTLQGFYLGQNQLSGTIPGNFGKLTALVKLNLTGNMLYGPIPTSFGNMKELTHLDLSYNELSGELPSIMSGVQSLVGLYVQNNKLSGHVGELFSNSMTWRIETMNLSCNCFDGNLPWSLGNLSYLTILDLHRNLLTGEIPLDLGNLIQLVYFDVSGNQLSGKIPEKLCSLVNLNYLDFSQNRLEGPIPITGICQNLSEVRFLGNRNLCGQMLGTNCEVKSIGRYSLFNVWRLGGIAIAVILVTLIFAFVLHRWISRKQNDPEDLEDRKLNSYVDQNLYFLSSSRSKEPLSINVAMFEQPLLKLTLVDILKATENFSKTNIIGDGGFGTVYKATLPNGRTVAVKKLSEAKTQGHREFMAEMETLGKIKHQNLVGLLGYCSMGEEKLLVYEYMVNGSLDLWLRNRTGGLEILNWNKRYKIATGAAKGLAFLHHGFIPHIIHRDVKASNILLNVDFEPKVADFGLARLISACETHISTDIAGTFGYIPPEYGQSGRSTTRGDVYSFGVILLELVTGKEPTGPDFKEIEGGNLVGWVGQKIKKGQAADVLDPTVLDADSKQMMLQMLQIACVCLSDNPANRPTMFQVHKFLKGMKGD* 1272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3781 1271 ProSiteProfiles Protein kinase domain profile. 993 1265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g3781 1271 SMART LRR_typ_2 139 162 IPR003591 -
Mtr1g3781 1271 SMART LRR_typ_2 91 115 IPR003591 -
Mtr1g3781 1271 SMART LRR_typ_2 800 824 IPR003591 -
Mtr1g3781 1271 SMART LRR_typ_2 654 678 IPR003591 -
Mtr1g3781 1271 SMART LRR_typ_2 260 284 IPR003591 -
Mtr1g3781 1271 SMART LRR_typ_2 570 594 IPR003591 -
Mtr1g3781 1271 SMART LRR_typ_2 848 873 IPR003591 -
Mtr1g3781 1271 SMART LRR_typ_2 726 749 IPR003591 -
Mtr1g3781 1271 SMART LRR_typ_2 702 725 IPR003591 -
Mtr1g3781 1271 SMART LRR_typ_2 522 546 IPR003591 -
Mtr1g3781 1271 SMART LRR_typ_2 750 773 IPR003591 -
Mtr1g3781 1271 SMART LRR_typ_2 606 630 IPR003591 -
Mtr1g3781 1271 SMART LRR_typ_2 163 187 IPR003591 -
Mtr1g3781 1271 ProSitePatterns Protein kinases ATP-binding region signature. 999 1022 IPR017441 GO:0005524
Mtr1g3781 1271 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 780 1269 - -
Mtr1g3781 1271 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 93 353 - -
Mtr1g3781 1271 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 335 770 - -
Mtr1g3781 1271 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 21 114 - -
Mtr1g3781 1271 Gene3D Ribonuclease Inhibitor 333 600 IPR032675 -
Mtr1g3781 1271 Gene3D Ribonuclease Inhibitor 185 332 IPR032675 -
Mtr1g3781 1271 Pfam Leucine rich repeat 117 174 IPR001611 GO:0005515
Mtr1g3781 1271 SUPERFAMILY L domain-like 595 887 - -
Mtr1g3781 1271 Gene3D Ribonuclease Inhibitor 25 184 IPR032675 -
Mtr1g3781 1271 SUPERFAMILY L domain-like 337 600 - -
Mtr1g3781 1271 SMART serkin_6 993 1265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g3781 1271 Gene3D Ribonuclease Inhibitor 773 895 IPR032675 -
Mtr1g3781 1271 Gene3D Ribonuclease Inhibitor 601 772 IPR032675 -
Mtr1g3781 1271 SUPERFAMILY Protein kinase-like (PK-like) 974 1265 IPR011009 -
Mtr1g3781 1271 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1115 1127 IPR008271 GO:0004672|GO:0006468
Mtr1g3781 1271 PRINTS Leucine-rich repeat signature 166 179 - -
Mtr1g3781 1271 PRINTS Leucine-rich repeat signature 654 667 - -
Mtr1g3781 1271 SUPERFAMILY RNI-like 70 393 - -
Mtr1g3781 1271 SMART LRR_sd22_2 726 752 - -
Mtr1g3781 1271 SMART LRR_sd22_2 654 669 - -
Mtr1g3781 1271 SMART LRR_sd22_2 848 876 - -
Mtr1g3781 1271 SMART LRR_sd22_2 546 572 - -
Mtr1g3781 1271 SMART LRR_sd22_2 236 262 - -
Mtr1g3781 1271 SMART LRR_sd22_2 139 165 - -
Mtr1g3781 1271 Gene3D Transferase(Phosphotransferase) domain 1 1069 1271 - -
Mtr1g3781 1271 Gene3D Phosphorylase Kinase; domain 1 955 1068 - -
Mtr1g3781 1271 Pfam Protein tyrosine and serine/threonine kinase 996 1265 IPR001245 GO:0004672|GO:0006468
Mtr1g3781 1271 Pfam Leucine rich repeat N-terminal domain 26 62 IPR013210 -
Mtr1g3781 1271 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 21 114 - -
Mtr1g3781 1271 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 335 770 - -
Mtr1g3781 1271 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 93 353 - -
Mtr1g3781 1271 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 780 1269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3781 Mtr-Chr1 49357592 49361767 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3781 22 1266 Receptor kinase-like Gene Family AT5G07280 58.833 0.0 1405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Mtr1g3781 PK_Tyr_Ser-Thr 2.7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3781 - - gmx:100780446 2064.66