Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3780 ATGGCTCCGTCGGTGGAACACAACGGCGAGTCTCAGAAATCCACTCCGACGCCGTTTCTCACCAAGACATACCACCTTGTGGATGAAATCGCCACCGACGATGTGATTTCGTGGAATGATACTGGAACTTCCTTCATCGTTTGGAATCCAACCATTTTCGCTAGGGATTTGCTTCCTAAATATTTTAAGCACAACAATTTCTCTAGCTTCGTTCGCCAACTCAATACTTATGGATTTAAAAAAGTTGTACCTGATCGGTGGGAATTTTCGAATGAATCTTTCCGAAGAGGTGAGGAACGGCTTCTCGGTGATATTCAGCGACGGAAAATCGTTTCAGCATCACTGGCGGCAGCTTCCAATGCCGGTGTGACCGCGACAAAAACGGTTCCGACAGCAAAGCCTATCGCGTCGCCGTCAATTTCAGGAGAGGAGCAGGTTATTTCTTCGAATTCCTCGCCGTCGATTTCTACGGCGGCGCTTTTAGACGAGAATGAGAGATTGAAAAAGGAGAACATGCAGTTAGCGAAGGAAATGGAGGACATGAAATCGCTCTACAGCAATATATTCAATCTTCTGTCGAATTACGTGAATTCTCAAACGGAAGGCGGTGCGGAAGGAAAAGAGTCTTGCTCAACGGCGTCGCCGGTGAAGACGCTTCGTTTGTTACCGGAGAAGCGGTGCAACGGCGAAGATGCAGCGGTGGAAGATAGAAACCCGAAGCTGTTTGGAATAGCGATTGATGCGAAGCGAGAGAGAGAAGGACGGTGTATTGAGGATGATGTGGTGTTGAGCCTGAATCATTCTGTTCATGTGGACTTGAAATCAGAGCCGTTTGATTCAAGGAAGGGTGAAAAGAGGAAAATGATGCGGCTAAATCAGTGCTATAGAGCAAATCAGAGTGTTTGCAATTGA 912 0.4704 MAPSVEHNGESQKSTPTPFLTKTYHLVDEIATDDVISWNDTGTSFIVWNPTIFARDLLPKYFKHNNFSSFVRQLNTYGFKKVVPDRWEFSNESFRRGEERLLGDIQRRKIVSASLAAASNAGVTATKTVPTAKPIASPSISGEEQVISSNSSPSISTAALLDENERLKKENMQLAKEMEDMKSLYSNIFNLLSNYVNSQTEGGAEGKESCSTASPVKTLRLLPEKRCNGEDAAVEDRNPKLFGIAIDAKREREGRCIEDDVVLSLNHSVHVDLKSEPFDSRKGEKRKMMRLNQCYRANQSVCN* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3780 303 Coils Coil 157 184 - -
Mtr1g3780 303 Pfam HSF-type DNA-binding 19 108 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mtr1g3780 303 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 7 287 IPR027725 -
Mtr1g3780 303 SUPERFAMILY "Winged helix" DNA-binding domain 15 108 IPR036390 -
Mtr1g3780 303 PRINTS Heat shock factor (HSF) domain signature 19 42 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mtr1g3780 303 PRINTS Heat shock factor (HSF) domain signature 57 69 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mtr1g3780 303 PRINTS Heat shock factor (HSF) domain signature 70 82 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mtr1g3780 303 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-2A 7 287 - -
Mtr1g3780 303 Gene3D - 11 109 IPR036388 -
Mtr1g3780 303 SMART hsfneu3 15 108 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mtr1g3780 303 ProSitePatterns HSF-type DNA-binding domain signature. 58 82 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3780 Mtr-Chr1 49349636 49350971 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3780 11 303 HSF AT5G62020 44.839 3.17e-77 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Mtr1g3780 HSF_DNA-bind 4.3e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3780 K09419 - gmx:100780987 342.043
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3780 1 49349636 49350971 Mtr1g3780 1 49349636 49350971 ECH
Mtr6g1468 6 24321157 24322985 Mtr1g3780 1 49349636 49350971 PCT