Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3768 ATGGGGTTCCAGCCACTAGAAAAGACAAAACCAAAACATAGGAAAGGTTTATGGTCACCTGAAGAAGATCACAAACTCAGAAACTACATTCTTAAACATGGTCATGGTTGCTGGAGCTCTGTCCCTATTAAGGCAGGCTTGCAAAGGAATGGAAAAAGCTGCAGACTAAGGTGGATTAACTATCTAAGGCCAGGATTAAAGAGAGGGAAGTTCAGCAAACAGGAGGAGGAAACAATCCTCACCCTTCATCACATGTTAGGCAACAAGTGGTCACAGATAGCACAACATTTGCCAGGAAGGACAGACAATGAGATAAAAAACTATTGGCATTCATATTTGAAAAAGAGAGTGGCCAAAGCTATGGAAATGGAATCACACAAACAATTTCAATATGCTAGCTCAAGCTCAGATACAATGAACTCTTCACCCTCTCTTCAAAAACTTGCAACACAAGATCCACATAATTATAAGAGCATCACCAAAGAGACTCATCAAAGCACCTTACCAAAACTATTGTTTGCTGAATGGCTTTCATTGGATCATGTTAATAATAATAATAGGAACTCTTCAAATTCAGTTGAATCTTTGGTCATGAGAAATGGATTTGATCAAAATTCAGCTTTTCAAGAAGTTACAATGCAAGAAGGACCCTTCAATGGAGAGTTTCATAATAGTGTGACTAACATTTCAGCCACTGAGATGTTCAATTCACAGATTAAATTTGCAAATCAAATTGTGGGAAATGGGTTTGTCCATTGCATGCCTGGAGTTGATTTAAGTAACAATTTCAATCTAAGCAATGATGCAATGTACGTTTGA 819 0.3785 MGFQPLEKTKPKHRKGLWSPEEDHKLRNYILKHGHGCWSSVPIKAGLQRNGKSCRLRWINYLRPGLKRGKFSKQEEETILTLHHMLGNKWSQIAQHLPGRTDNEIKNYWHSYLKKRVAKAMEMESHKQFQYASSSSDTMNSSPSLQKLATQDPHNYKSITKETHQSTLPKLLFAEWLSLDHVNNNNRNSSNSVESLVMRNGFDQNSAFQEVTMQEGPFNGEFHNSVTNISATEMFNSQIKFANQIVGNGFVHCMPGVDLSNNFNLSNDAMYV* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3768 272 CDD SANT 18 62 IPR001005 -
Mtr1g3768 272 Gene3D - 15 67 - -
Mtr1g3768 272 Gene3D - 69 141 - -
Mtr1g3768 272 PANTHER MYB DOMAIN PROTEIN 55 1 154 - -
Mtr1g3768 272 PANTHER MYB DOMAIN PROTEIN 55 158 265 - -
Mtr1g3768 272 PANTHER MYB TRANSCRIPTION FACTOR 158 265 - -
Mtr1g3768 272 PANTHER MYB TRANSCRIPTION FACTOR 1 154 - -
Mtr1g3768 272 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Mtr1g3768 272 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Mtr1g3768 272 SMART sant 67 115 IPR001005 -
Mtr1g3768 272 SMART sant 14 64 IPR001005 -
Mtr1g3768 272 CDD SANT 70 113 IPR001005 -
Mtr1g3768 272 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Mtr1g3768 272 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Mtr1g3768 272 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Mtr1g3768 272 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Mtr1g3768 272 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3768 Mtr-Chr1 49249423 49251874 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3768 7 178 MYB Transcription Factor Family AT5G52260 55.897 3.04e-63 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mtr1g3768 Myb_DNA-binding 1.8e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3768 K09422 - gmx:778167 439.113
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3768 1 49249423 49251874 Mtr1g3768 1 49249423 49251874 ECH