Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3766 ATGGGTAAAGCACCTTGTTGTGAGAAACATGGTGTGAAAAGAGGAGCTTGGACTCCTGAAGAAGATGAAGCTTTAGTTGACTACATAACCAAACATGGCCATGGAAGTTGGCGTACACTTCCTAAACATGCAGGTCTCCTAAGATGCGGTAAAAGTTGCCGGCTTCGGTGGATAAACTATCTTCGTCCCGGCATCAAGCGTGGCTCATTTACTAATGAAGAAGAAACTACTATTATTCAACTTCATGCCATGCTTGGCAACAGGTGGGCTGCTATAGCAGCTCAACTACCAGGAAGAACAGACAATGAGATTAAGAACTATTGGAACACCCATTTAAAGAAACGTGTCCGGCAGTCACTAGGGGAAAAACATCCATGTCTCCTTCCTGATAGGAATGTCCAGTCTAATTCTCCTTCTACACGCCACATGGTCCAGTGGGAAAGTGCAAGGGTTGAAGCAGAGACGAGGCTGTCGTTGGAGTCCACTTTGCTTAATTCAGGCTCTACGACTAAAACATACCCTGATTACTTTCTTCAACTTTGGCATTCTGATGTTGGAGACAAATTCCGTGCAGGAGTAGTGTGTCAAAGCATCGTCTCATTGGAGGAATCATGTTCAGATGTCTCATTGCAGGTGAAAAACAACCGAACACAAAGCCTGAAAGTGTCAACACCAAAGCTTGAAGATGTCAACCTGATTCAGGAACAAAATGCCAGTAGCTACAAACTGAAGCTTGAAGATGATATATCTGGTTCAGATTCAGGAAATTATGAATTTCTTGATACTTCTGATTCTGCACTGAAGCACCTACTGCGCATGCCTGATGAAATAGGTTTCCTGGGACATACTGACAATTTCTTGAATCTCCTTGATGGTAGATGTGACTAA 888 0.4336 MGKAPCCEKHGVKRGAWTPEEDEALVDYITKHGHGSWRTLPKHAGLLRCGKSCRLRWINYLRPGIKRGSFTNEEETTIIQLHAMLGNRWAAIAAQLPGRTDNEIKNYWNTHLKKRVRQSLGEKHPCLLPDRNVQSNSPSTRHMVQWESARVEAETRLSLESTLLNSGSTTKTYPDYFLQLWHSDVGDKFRAGVVCQSIVSLEESCSDVSLQVKNNRTQSLKVSTPKLEDVNLIQEQNASSYKLKLEDDISGSDSGNYEFLDTSDSALKHLLRMPDEIGFLGHTDNFLNLLDGRCD* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3766 295 CDD SANT 69 112 IPR001005 -
Mtr1g3766 295 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Mtr1g3766 295 PANTHER MYB TRANSCRIPTION FACTOR MIXTA-LIKE PROTEIN 1 281 - -
Mtr1g3766 295 CDD SANT 16 61 IPR001005 -
Mtr1g3766 295 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Mtr1g3766 295 Gene3D - 68 142 - -
Mtr1g3766 295 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Mtr1g3766 295 SMART sant 66 114 IPR001005 -
Mtr1g3766 295 SMART sant 13 63 IPR001005 -
Mtr1g3766 295 Gene3D - 14 66 - -
Mtr1g3766 295 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Mtr1g3766 295 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Mtr1g3766 295 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Mtr1g3766 295 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Mtr1g3766 295 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3766 Mtr-Chr1 49238808 49241272 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3766 1 280 MYB Transcription Factor Family AT3G61250 51.178 1.88e-90 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mtr1g3766 Myb_DNA-binding 1.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3766 K09422 - gmx:100782075 446.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3766 1 49238808 49241272 Mtr1g3766 1 49238808 49241272 ECH