Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3752 ATGGTGAGCCAAAGACAACGACTCGCTAAGAAACGCTACAAAGAAGAACACCCCGAACTCTTCCCCAAAGTCGACCCAACTCCACCAAACGACCCATCAAAAAAGAAGAAAAACAAATTCAAGCGCAAAAAACCCGACTCAAACTCCAAACCCCGAACCGGAAAACGCCCCCTTCGAGTTCCCGGTATGAAACCCGGCGACAGCTGTTTCATTTGCAAGGGATTAGACCACATCGCTAAATTCTGTACTCAGAAAGCTGAATGGGAAAAGAATAAGATATGTTTGCGGTGTCGGCGTCGTGGTCATCGAGCTCAGAATTGTCCTGATGGTGGTTCTAAAGAGGATTTTAAGTATTGTTATAACTGTGGTGATAATGGTCACTCTCTTGCTAATTGTCCTCATCCTCTTCAAGAAGGCGGGACTATGTTTGCTCAGTGTTTTGTTTGTAAGGAACAAGGGCATTTGAGTAAAAATTGCCCTAAAAATGCTCATGGCATTTATCCTAAGGGTGGTTGTTGTAAAATATGTGGTGGTGTCACACATTTGGCAAGGGATTGTCCTGATAAAGGGCAGAATGGATTTGGTGATGGTCGTCCTAAAGGGCCTGTTCATAACTTATTGAGAACCGACGAGAGGCCCAGTGGTCAGGTTACCAAATTTGTGAGTGGAGATGATATGGACGACGACTTCACAACAGAAGTAAAAAGCGAGGAAAAGAACAAGTCTGCAAAGTCTGAAGATGGCAATGTAAAACCAAAGAAAGGTCCTAAAGTCGTGAACTTTGATTAG 789 0.4385 MVSQRQRLAKKRYKEEHPELFPKVDPTPPNDPSKKKKNKFKRKKPDSNSKPRTGKRPLRVPGMKPGDSCFICKGLDHIAKFCTQKAEWEKNKICLRCRRRGHRAQNCPDGGSKEDFKYCYNCGDNGHSLANCPHPLQEGGTMFAQCFVCKEQGHLSKNCPKNAHGIYPKGGCCKICGGVTHLARDCPDKGQNGFGDGRPKGPVHNLLRTDERPSGQVTKFVSGDDMDDDFTTEVKSEEKNKSAKSEDGNVKPKKGPKVVNFD* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3752 262 MobiDBLite consensus disorder prediction 215 262 - -
Mtr1g3752 262 MobiDBLite consensus disorder prediction 1 62 - -
Mtr1g3752 262 MobiDBLite consensus disorder prediction 190 209 - -
Mtr1g3752 262 MobiDBLite consensus disorder prediction 222 253 - -
Mtr1g3752 262 Gene3D - 114 165 - -
Mtr1g3752 262 MobiDBLite consensus disorder prediction 8 22 - -
Mtr1g3752 262 ProSiteProfiles Zinc finger CCHC-type profile. 94 109 IPR001878 GO:0003676|GO:0008270
Mtr1g3752 262 ProSiteProfiles Zinc finger CCHC-type profile. 119 133 IPR001878 GO:0003676|GO:0008270
Mtr1g3752 262 SMART c2hcfinal6 145 161 IPR001878 GO:0003676|GO:0008270
Mtr1g3752 262 SMART c2hcfinal6 93 109 IPR001878 GO:0003676|GO:0008270
Mtr1g3752 262 SMART c2hcfinal6 68 84 IPR001878 GO:0003676|GO:0008270
Mtr1g3752 262 SMART c2hcfinal6 118 134 IPR001878 GO:0003676|GO:0008270
Mtr1g3752 262 SMART c2hcfinal6 172 188 IPR001878 GO:0003676|GO:0008270
Mtr1g3752 262 MobiDBLite consensus disorder prediction 35 49 - -
Mtr1g3752 262 ProSiteProfiles Zinc finger CCHC-type profile. 146 161 IPR001878 GO:0003676|GO:0008270
Mtr1g3752 262 SUPERFAMILY Retrovirus zinc finger-like domains 62 110 IPR036875 GO:0003676|GO:0008270
Mtr1g3752 262 PANTHER OS04G0555800 PROTEIN 1 261 - -
Mtr1g3752 262 Pfam Zinc knuckle 118 134 IPR001878 GO:0003676|GO:0008270
Mtr1g3752 262 Pfam Zinc knuckle 145 161 IPR001878 GO:0003676|GO:0008270
Mtr1g3752 262 SUPERFAMILY Retrovirus zinc finger-like domains 112 163 IPR036875 GO:0003676|GO:0008270
Mtr1g3752 262 Gene3D - 63 113 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3752 94 189 C2H2 Transcription Factor Family AT5G20220 30.702 5.26e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3752 - K05765 gmx:121174300 358.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3752 1 49107268 49111255 Mtr1g3752 1 49107268 49111255 ECH