Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3742 ATGTCAGAACCTGAAGAAGAAAATCAAGACTTTCCTCCCAAGACAAAAACATCATTAGAAGAACATGGTTGTTCTATGGATTTTGACCTAGATTTAGAAACATCATGGCCTTTGGATCACATGTCCTTTATCACCAATCCCATGTCACCTTTTTTATTTTCAAACATCTCTGATCAACCTTCTTCTCCTCTTTGGACTTTTACTGATGGAGAAGATGGCAAACTTGCAGCTTCAGCTTTATCTGATTGCCACAAGATCTTCTCTTGTGATTCAAATTCAATAACTGAGAAGCTGGTGGAGAAAGACGACAACAAAACACTTTTGCCACCTCTTTTGCCACCAATAGAGAATTTGGATGGATATTGTGTAATCAAGGAAAAGATGACACAAGCGCTTCGTTACTTTAAAGAGTGGACTGAACTGAATGTTCTGGCTCAGGTTTGGGCACCTGTGAGGAATGGTAATCGGTATGTACTTACAACTTCAGGTCAACCCTTTGTCCTTGATCCGCATAGTAATGGACTCAATCAGTATAGAACGGTCTCCCTGATGTACATGTTTTCTGTGGATGGAGAGAACGATGGAACTCTAGGACTTCCTGGTCGAGTTTTTCAGCAGAAACTACCAGAATGGTCTCCCAATGTTCTGTACTATTCTAATAAAGAGTATCCCCGCCGAGATCATGCTCAACATTACAACGTTCGTGGAACCTTGGCTTTGCCTGTATTTGAACCTTCGTTGCAGTCGTGTATCGGTGTGATAGAGTTGATCATGACTTCACTAAAGATTAACTATGCTCCTGAGGTTGAAAAAATCTGCAAAGCCCTAGAGGCAGTAAATTTGAGGAGCTCAGAGTTTTTGGACCATCCATTCACTCAGATTTGCAATGAAGGGCGTCAAAATGCATTATCGGAGATCTTAGAGATATTGACAGTGGTGTGTGAAACTCATAATCTACCTCTAGCCCAAACATGGGTTCCCTGTAGGCATAGGAGTGTTTTGGCTCATGGTGGCGGTTTCAAGAAAAGTTGTTCGAGTTTTGATGGTAGTTGCATGGGGCAAGTATGCATGTCGACAACTGAGGCAGCAGCCTATATTGTAGATGCTCATTTATGGGGCTTCAGAGAGGCATGTGTCGAGCATCACTTACAACAAGGTCAAGGTGTTGCGGGTAGGGCGTTTTTGTCTCAAACCATGAGCTTCTGCACAAACATTACCCAGTTCTGCAAGACAGATTACCCTTTGGTTCATTATGCTCTCATGTTTGGGTTAACAAGCTGTTTTGCAATCTGTTTGCGGAGTTTTCATACAGGAAATGACGATTATGTATTAGAGTTTTTTCTGCCTCCTGGGATCACTGAATTTCATGAACAGAAGACGCTGTTGGGATCCATATTTTCAACAATGAAACAGCATTTTCAGAGTCTTAACATTGCTGCTGGTGTTGAACTCGAGGAAAATGGTTCAATTGAAATTATTGAAGCAACTGATGAAGGCATTCGTCTTAGAACCGAATCTATTCCTATTGCTCAATCTATTAAATCACCACCTAGACCCGATGCCTCACCAAATATGGAGGACGAAGAGGAGGGAGTACCACAGGATCCATCAGAGGTTCGTGGTGAAAATGTAGGTGGAAGTGTTGATCCGATGTCTACCTTAGGGAATAAAAACATAAAGAAACCCTCAGAGAGGAAACGTGGAAAAACTGAGAAATCAATTAGTCTTGAAGTTCTACAACGTTATTTTGCTGGGAGTCTTAAAGATGCTGCAAAGAGCCTTGGTGTTTGCCCTACTACAATGAAGCGTATCTGCAGGCAGCATGGGATATCTCGTTGGCCATCTCGAAAGATCAACAAGGTTAACCGTTCCCTATCCAAGCTCAAACGTGTTATTGAATCTGTCCAAGGCGCTGAAGGAGCGTTTGATTTGAATTCTCTTGGTAATAATCAACTTCCAATTGTTAGTTCATTTCCTGAGCCTTCTACTCTGAATAAGTCCAGCCAGCAAGGCTCGTTAAGCAATAGGCCGTCAGAGCCTCAGATGAAAGAGAATGAATTTGATGCCTCTAAAGTATCAGAAACAAACTTACAGATTGTAATGGAAAATCAATTGCTAGGAGGAAGGAAACATAGTCTTGAGAAAGAAGTGATTAATGGTAAAGGCGTGACTATTCAGGAAATTGGAAAGGACCGAAAAAGGAATAGAACTAGGAGTGGCTCGAGCGAAGATAGCACAAACCCTACTTCTCATGGTTCATGCCACGGTAGTCCCCCAATTGAAATTCCAACCATAAAAGATCTGTTCATTCCATCCAACAATGAACAACATGTTGTGTTGAGGAGATCGCCAGAGCCAGGAATGCAGCCGACTAATGCTTTAAACTCTCCAACTGCTCACCGTATGGTGGACAATGTGATAGCAGAACTTCAAGAGCCATTTGGAGGATTGCTAATAGAGGACGCTGGAAGTTCGAAAGACTTGAGAAATTTGTGTCCTTCAGTAGCTGAGGCCATTTTGGAGGATATGGCTCCAGAAGCTTGTGGTAACAACTTTCCAGGTTCATCACATCTGGCTCCTCCTAAACAATGCATAGATACTATCAATAATTCAGCGACGCCTTTTGCAGCTAGAAAAGAAATGAAGACTGTAACTATTAAGGCAACATATAGAGAAGATATCATAAGGTTTAGGGTCTCTTTGAACTGTGGCATTGTGGAATTGAAAGAAGAAGTTTCCAAAAGATTGAAACTTGAGGTTGGCACATTTGATATCAAGTACATGGACGATGATAATGAATGGGTTTTGATAGCATGTGATGCAGACCTTCAGGAGTGCATGTATCTTTCAAGATCATCCGGAGGAAGCAACATAATCCGGGTTTTAGTGCATGACATAACATCGAATCTTGGAAGCTCCTGTGAGAGTTCAGGGGAGTGA 2940 0.4187 MSEPEEENQDFPPKTKTSLEEHGCSMDFDLDLETSWPLDHMSFITNPMSPFLFSNISDQPSSPLWTFTDGEDGKLAASALSDCHKIFSCDSNSITEKLVEKDDNKTLLPPLLPPIENLDGYCVIKEKMTQALRYFKEWTELNVLAQVWAPVRNGNRYVLTTSGQPFVLDPHSNGLNQYRTVSLMYMFSVDGENDGTLGLPGRVFQQKLPEWSPNVLYYSNKEYPRRDHAQHYNVRGTLALPVFEPSLQSCIGVIELIMTSLKINYAPEVEKICKALEAVNLRSSEFLDHPFTQICNEGRQNALSEILEILTVVCETHNLPLAQTWVPCRHRSVLAHGGGFKKSCSSFDGSCMGQVCMSTTEAAAYIVDAHLWGFREACVEHHLQQGQGVAGRAFLSQTMSFCTNITQFCKTDYPLVHYALMFGLTSCFAICLRSFHTGNDDYVLEFFLPPGITEFHEQKTLLGSIFSTMKQHFQSLNIAAGVELEENGSIEIIEATDEGIRLRTESIPIAQSIKSPPRPDASPNMEDEEEGVPQDPSEVRGENVGGSVDPMSTLGNKNIKKPSERKRGKTEKSISLEVLQRYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQGAEGAFDLNSLGNNQLPIVSSFPEPSTLNKSSQQGSLSNRPSEPQMKENEFDASKVSETNLQIVMENQLLGGRKHSLEKEVINGKGVTIQEIGKDRKRNRTRSGSSEDSTNPTSHGSCHGSPPIEIPTIKDLFIPSNNEQHVVLRRSPEPGMQPTNALNSPTAHRMVDNVIAELQEPFGGLLIEDAGSSKDLRNLCPSVAEAILEDMAPEACGNNFPGSSHLAPPKQCIDTINNSATPFAARKEMKTVTIKATYREDIIRFRVSLNCGIVELKEEVSKRLKLEVGTFDIKYMDDDNEWVLIACDADLQECMYLSRSSGGSNIIRVLVHDITSNLGSSCESSGE* 980
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3742 979 MobiDBLite consensus disorder prediction 724 760 - -
Mtr1g3742 979 MobiDBLite consensus disorder prediction 506 571 - -
Mtr1g3742 979 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 4 978 - -
Mtr1g3742 979 CDD PB1_NLP 884 965 IPR034891 -
Mtr1g3742 979 MobiDBLite consensus disorder prediction 1 20 - -
Mtr1g3742 979 ProSiteProfiles RWP-RK domain profile. 560 641 IPR003035 -
Mtr1g3742 979 MobiDBLite consensus disorder prediction 655 680 - -
Mtr1g3742 979 Gene3D - 880 963 - -
Mtr1g3742 979 ProSiteProfiles PB1 domain profile. 883 966 IPR000270 GO:0005515
Mtr1g3742 979 SMART PB1_new 883 966 IPR000270 GO:0005515
Mtr1g3742 979 MobiDBLite consensus disorder prediction 726 740 - -
Mtr1g3742 979 Pfam RWP-RK domain 573 621 IPR003035 -
Mtr1g3742 979 SUPERFAMILY CAD & PB1 domains 880 969 - -
Mtr1g3742 979 PANTHER PROTEIN NLP8 4 978 IPR045012 GO:0003700
Mtr1g3742 979 MobiDBLite consensus disorder prediction 655 691 - -
Mtr1g3742 979 Pfam PB1 domain 883 965 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3742 Mtr-Chr1 48985267 48990067 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3742 258 979 NLP Transcription Factor Family AT4G24020 53.226 0.0 675
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Mtr1g3742 PB1 1.1e-18 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3742 - - gmx:100786118 1524.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr6g1461 6 24065712 24071755 Mtr1g3742 1 48985267 48990067 PCT