Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3733 ATGGGTAGCATACAAGAAGCAGTATCGATTACAGAAGAACGAGTGAAGGGTGTTGAAGAAAACGACACCGTTTATGTTGCGGTGGGATTGAACGCTGAGAAGAACAAAAAACTATTGCATTGGACAACTCACAAATTTTCTGGTAACAGTATTTGCCTTCTTCACATTCATCAACCTGACCTTGTCAATTCCTTCAGTAAAGCAGAAACAAATGTCTTTGAATATGAACCTAAAGACCATGCAACCAAGGCATTCCAAGAGCATGGTAGTCAAACAGTGCACGAACTCCTAGACAAGTACATCCTCACTCTGGTCCCAGCAGGGGCCTCTAAATTGTTGATTGAGAAGGATGATATTGAGAAAGGGATCATAGAAGCTATTGCTCAACACAATATTAGATGTCTTGTAATGGGAGCAGCTGCAGACAGACATAAGATGGGGGTGGACAGTGAAAACACGCCTGGAATAGTGACTGCCCCTGTAGTGTTGATGCTCGACTCAAATACGGAAGCCAAACAATCTGAAAAGATTAAATCAGAATTGATTCCTGATGTATTGAAATATTTAGATTCTAGTGACATGGAAGAGACTGAAAACGGCAATTCCCGCTGTTCTTTAAATGCAGAATGGTCCTTTAACAGTGTTATTGCAAGAACAAAGTTGACAGATTTGCTTGTTCATGAGGATGATGAAGAATTACAGAACTGGCGTGCTAAGGAGATAAGTTGTAGAAAAGAAGTTGAAGTACAATTGGCAAGGGAAAAACAAGACGTACAAGAAATGAAGAACCAGCGAGATAAAATAATATGTGAATTGCAAATGGTCCAAGACCAAAGTTCAACTCTTAGAAACCAAATGCTCGAGTCCAAGTGTATGGTAACTGAGTTGGAAGAGAAGATTATATCAGCAGTGGACCTTTTGATAAGTTTCAAGGAAAAACGAGATAAGCTAAGGATAGAACATGCAAATGCAGTTAGGAAAGTTGAAGTGCTGAGAAAATTTGGAGAAGTGGATACTACATCCTCTTATGTGGTAGAATTCCCTGCATTTTCCTTTATGGAGATCAATGAGGCAACTCAGGATTTTGACCAATCTTGGAAAATTGGAGAGGGAAGGTATGGAAGTGTTTACAAGGGACTGCTTCGCAACATGCCAGTTGCCATAAAAATGCTACCCTCTTATGGTTGCCAAAACCAATTAGAGTTTCAGCATCAGGTAGAGGTTTTAAGTAGAGTACGACATCCAAACCTGTTAACACTAATTGGAAGCTGCGCAGAGTCTAAGTCACTTGTGTATGAATATCTAAACAATGGTAGCCTTGAAAGCCATCTTGCCTGCAAAGACAGGACTCCACTTCCATGGCAAATTCGAATATCCATTGCTACCGACATATGCTCAGCTCTAATTTTCCTTCAATCCAGCAAGCCTTGTATTATCCATGGGAATTTGAAGCCTAGTAAGGTTCTCCTTGATGCTAACTTTGTTGCCAAACTTGGTGACCTGGGGATTCCTTCTTTAGTCCAGCACAGTATGGATTCAGCTGACACAGGCACAGTAGTATGTAATAACTCACATAAACATTTGGCGTATGTGGATCCAGAGTGTCTTGTCACTGGTAAATTTACACCAGAGTCAGACGTGTATTCGTTCGGAATCATACTGTTGCAACTTCTAACTGGAAGACCACTTTCGGGGCTAGTTAGAGATATGAAATGTGCATTGGAAATGGAAAATCTTAAAACTGTGTTGGACTTTTCAGCTGGTGAGTGGCCACTTCATCAAACCACACAACTGGCATACTTAGCATTGAGGTGTTGTGAGAAGACTTGGCTGAACCGGCCAGATCTTGTGTCAGAAATCTGGAGTGTTCTTAAACCATTCAGAACTATTTGCATTGACAGGAGACAAGAGTTGACTTCTAAGAAGCTTCAACGAGCTCCTTCTCATTTTGTGTGCCCCATTGTCCAGGAAGTTATGGAAGACCCATACATAGCTGCAGATGGCTTTACATATGAAGAAGAGGCAATAAGGGGATGGTTGGACAGTGGTCACAACACTTCCCCTATGACAAACCTCAAACTTGAACACACAGATTTGGTACCTAATTATGCATTACATAATGCCATTCTGGAGTGGCAGCAACTGTGA 2148 0.4115 MGSIQEAVSITEERVKGVEENDTVYVAVGLNAEKNKKLLHWTTHKFSGNSICLLHIHQPDLVNSFSKAETNVFEYEPKDHATKAFQEHGSQTVHELLDKYILTLVPAGASKLLIEKDDIEKGIIEAIAQHNIRCLVMGAAADRHKMGVDSENTPGIVTAPVVLMLDSNTEAKQSEKIKSELIPDVLKYLDSSDMEETENGNSRCSLNAEWSFNSVIARTKLTDLLVHEDDEELQNWRAKEISCRKEVEVQLAREKQDVQEMKNQRDKIICELQMVQDQSSTLRNQMLESKCMVTELEEKIISAVDLLISFKEKRDKLRIEHANAVRKVEVLRKFGEVDTTSSYVVEFPAFSFMEINEATQDFDQSWKIGEGRYGSVYKGLLRNMPVAIKMLPSYGCQNQLEFQHQVEVLSRVRHPNLLTLIGSCAESKSLVYEYLNNGSLESHLACKDRTPLPWQIRISIATDICSALIFLQSSKPCIIHGNLKPSKVLLDANFVAKLGDLGIPSLVQHSMDSADTGTVVCNNSHKHLAYVDPECLVTGKFTPESDVYSFGIILLQLLTGRPLSGLVRDMKCALEMENLKTVLDFSAGEWPLHQTTQLAYLALRCCEKTWLNRPDLVSEIWSVLKPFRTICIDRRQELTSKKLQRAPSHFVCPIVQEVMEDPYIAADGFTYEEEAIRGWLDSGHNTSPMTNLKLEHTDLVPNYALHNAILEWQQL* 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3733 715 Gene3D Phosphorylase Kinase; domain 1 335 434 - -
Mtr1g3733 715 Pfam U-box domain 646 713 IPR003613 GO:0004842|GO:0016567
Mtr1g3733 715 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 645 715 IPR013083 -
Mtr1g3733 715 Coils Coil 244 278 - -
Mtr1g3733 715 ProSitePatterns Protein kinases ATP-binding region signature. 368 389 IPR017441 GO:0005524
Mtr1g3733 715 ProSiteProfiles Protein kinase domain profile. 362 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g3733 715 CDD RING-Ubox_WDSUB1_like 650 691 - -
Mtr1g3733 715 Gene3D Transferase(Phosphotransferase) domain 1 435 630 - -
Mtr1g3733 715 ProSiteProfiles U-box domain profile. 645 715 IPR003613 GO:0004842|GO:0016567
Mtr1g3733 715 SMART Ubox_2 649 712 IPR003613 GO:0004842|GO:0016567
Mtr1g3733 715 SUPERFAMILY Protein kinase-like (PK-like) 338 616 IPR011009 -
Mtr1g3733 715 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 32 18 147 - -
Mtr1g3733 715 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 32 222 714 - -
Mtr1g3733 715 PANTHER OS02G0152300 PROTEIN 222 714 - -
Mtr1g3733 715 PANTHER OS02G0152300 PROTEIN 18 147 - -
Mtr1g3733 715 SUPERFAMILY RING/U-box 643 713 - -
Mtr1g3733 715 Pfam Protein tyrosine and serine/threonine kinase 367 616 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3733 Mtr-Chr1 48903845 48913208 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3733 264 713 U-box Gene Family AT3G49060 52.539 2.65e-159 478
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Mtr1g3733 PK_Tyr_Ser-Thr 1.4e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3733 - - mtr:MTR_1g100820 1422.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3733 1 48903845 48913208 Mtr1g3733 1 48903845 48913208 ECH