Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3688 ATGCAACTCAAACACGGATGTCCATGCGCGTCTGCATCTGGTTTATTTGGTTCCCGGTCAATCCTCTCTTCAAAAGGCATAATTAGAGCTCCTATGACGTGCACAAGCCGTGTCTGTTTTGATGAAAAGCGTCTCCTAGATTCACTCTACAAGGTCTTGCTTTCTATATTGGAAACTGATTCTGTTATCTTATACATCAAGAATGTTGAGAATGACTTTCGACAATATCCTAGGATGTACAATTTGTTCCATGAGCTATTAAATAAACTTTCAGGGTCAGTTTTGATACTTGGTTCCCGGATTTATGATTCCGAAGATAAATGTGTAGAAGTTGATGAAAAACTCACTATGTTATTCCCTTGCAACATTGAGATCAAACCGCCTCAAGATGAGTCTCGTCTCAAAATTTGGAAAGTCCAACTAGAAGAGGCCATGACAAAGACTCAGTTGAAACACATTTCTCAAGTGCTTGCAGAGAATAACATTGGTTGTGATGACTTGAATACTATCGGTCATTCTGACACTATGCTACTAAGTAATCACATCAAAGAGATTGCCGCATCTGCAGTGTTTTATCAATTGATGGATAACAAAAATCCAGAGTACCGAAACGGAAAACTAGTTATATCAGCCGAGAGTTTGTGCCATGTATTGAGCGTGTTCCAGAAGGGTGAAAGTAGCGATAATGATAATAAGAAGACTACAAAAGAATCAAAGAAGGAAGTTCCTCCTGACAATGCCTTTGAGAAGAACATAAGACGAGAGCTTATCTCTGCAAACGAGATAGGGGTGACTTTTTCAGATATTGGTGCATTGGATGACGTTAAAGAATCACTTCAAGAAGCAGTTATGCTTCCCCTTAGAAGACCAGATATATTCAAAGGGGATGGGGTTCTGAAGCCATGTAAAGGTGTATTACTTTTTGGACCTCCTGGTACAGGAAAGACAATGCTCGCAAAGGCAATTGCAAATGAAGCTGGAGCAAGTTTCATCAATGTCTCTGCATCCACAATCTCTTCATGTTGGTTTGGAAACGGTGAAAAGAACGTCCGAGCTTTGTTTTCACTAGCAGCAAAGGTTTCCCCAACTATTATTTTCATTGATGAAGTTGATAGCTTGCTTGGGAAGCGGTCTGACAATGATGACAAGACAATGAGAAGGATTAAAAATGAATTCATGTCCCACTGGGATGGACTATTGTCAAAACCTGTCGAGAAAGTTACTGTTCTTGCTGCAACCAACATGCCATTTGGCCTTGATGAAGCAATTATAAGACGCTTCCAGCGCAGGATAATGGTTGGTCTTCCGTCTGCTGAGAAGAGGGAAACGATCTTGAAAACTCTTCTAGCTAAGGAAAAACACGAAGATATAGACTTCAAAGAGCTTTCAACTATGACAGAAGGATATAGTGGAAGCGACCTTAAGAACTTGTGCACCACTGCAGCCTATCGCCCCATTAAGGAGCTAATGCAACAGGAGAAGGAAAAAGAAATGGTAGATGCTAAACTATTACATATAATAATAAAAAGAAGAAAAAGGAGGCAGAAGTTGAAAAATCAGAAGATGTTTCCAATACTGGAGATGAAGAAAAAAGTGATCAAGTGA 1605 0.3981 MQLKHGCPCASASGLFGSRSILSSKGIIRAPMTCTSRVCFDEKRLLDSLYKVLLSILETDSVILYIKNVENDFRQYPRMYNLFHELLNKLSGSVLILGSRIYDSEDKCVEVDEKLTMLFPCNIEIKPPQDESRLKIWKVQLEEAMTKTQLKHISQVLAENNIGCDDLNTIGHSDTMLLSNHIKEIAASAVFYQLMDNKNPEYRNGKLVISAESLCHVLSVFQKGESSDNDNKKTTKESKKEVPPDNAFEKNIRRELISANEIGVTFSDIGALDDVKESLQEAVMLPLRRPDIFKGDGVLKPCKGVLLFGPPGTGKTMLAKAIANEAGASFINVSASTISSCWFGNGEKNVRALFSLAAKVSPTIIFIDEVDSLLGKRSDNDDKTMRRIKNEFMSHWDGLLSKPVEKVTVLAATNMPFGLDEAIIRRFQRRIMVGLPSAEKRETILKTLLAKEKHEDIDFKELSTMTEGYSGSDLKNLCTTAAYRPIKELMQQEKEKEMVDAKLLHIIIKRRKRRQKLKNQKMFPILEMKKKVIK* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3688 534 Gene3D - 263 519 IPR027417 -
Mtr1g3688 534 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 27 237 - -
Mtr1g3688 534 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 239 505 - -
Mtr1g3688 534 SMART AAA_5 301 437 IPR003593 -
Mtr1g3688 534 MobiDBLite consensus disorder prediction 224 246 - -
Mtr1g3688 534 Pfam ATPase family associated with various cellular activities (AAA) 305 434 IPR003959 GO:0005524|GO:0016887
Mtr1g3688 534 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 239 505 - -
Mtr1g3688 534 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 27 237 - -
Mtr1g3688 534 MobiDBLite consensus disorder prediction 226 246 - -
Mtr1g3688 534 CDD AAA 303 435 - -
Mtr1g3688 534 Gene3D - 436 518 - -
Mtr1g3688 534 ProSiteProfiles NF-YA/HAP2 family profile. 493 534 IPR001289 GO:0003700|GO:0006355
Mtr1g3688 534 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 263 504 IPR027417 -
Mtr1g3688 534 ProSitePatterns AAA-protein family signature. 407 426 IPR003960 GO:0005524|GO:0016887
Mtr1g3688 534 Pfam AAA+ lid domain 456 497 IPR041569 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3688 Mtr-Chr1 48569401 48573548 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3688 264 494 Calmodulin-binding Proteins AT3G56690 40.254 7.65e-44 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3688 - - cam:101506297 714.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3688 1 48569401 48573548 Mtr1g3688 1 48569401 48573548 ECH