Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3685 ATGAAAGACGATTCGATGCACTCAAAACCTTGTCATGAGATGACAGATATGGATGGAGATTTTACCATGGTTGTCTCAAATGATACTCATGTCAGTGCTCTTGATGTGAAGCCTCTCAATAGTGAACCACCATCAAAGCCCCCCTTAGAGCCCATTGAAGGAATGGAGTTTAAATCATTTGAAGAGGCAAAGAGTTACTACACAAGGTACGCTCAGAACAAAGGTTTTAGTTTCCGCATGGGCCGTGTTACTAAGTCAAGAACAAACGGTATGATAATTGGTCAAGAAATTCTTTGTTCAAAGGAGGGGTTTCGAGCCAAAAAGTATGTGAAACAAGGAAATAGTAGTCTCATTACACATGATGAAACCAGGGTGGGATGCAAGGCACGGTTATATTTAAAGAAAAATAATGATATATGGATTGTTTCTAGATTTGTAAGCGACCATAATCACCAGCTGTTTTCTCCTAGAAGTGCACAGTCTCTTCGCGTACATAGAAAGAAAACTAAAGTGCAAAAGACACTTACTGATGTGCTTGATGAATCTGGTTTAGGCAAAACAACATCTATCTTATGCACTGAAAGTGGCGGTATTGATAATTTTGGATCTAGTCAACAAGATGTTATCAATTACTTAAGTGTACAGAGACAAAAACAATTTGAAAACAGAGATGCTCAATTGATGTTATCATACTTTAAGAATTGTCAGTTGAAGAATACTGGGTTTTTCTATGCGTTTCAAATGGATGCCGAAGGAAAATTAACTAATTGCTTTTGGGTTGATTCAAGGTCTAGAGTTGCTTACAAATATTTTGGTGATGTGGTTACTTTTGATCCAACGTACTTGAAAAATAAATACAAAACTCCTTTTGTTCCAATTACTGGAGTTAATCATCATCAACAATCAATTCTTTTTGGTTGTGCTCTCTTGTGGGATGAAGCTGTAGAGAGTTTTGATTGGTTGCTAAGTACTTGGTTAGAAGCAATGAGTGGGGTTTGCCCTAAAACTGTTATCACAGACCAACACACTGCTATCACCAATGCAGTTGCAAGGGTGTTTCCAAAGGTTAATCACCATTATTGCATGTGGCATATTGAGGAAAAAGTTCCAGAGCACATGGATCATATCTATCATGGACACAGTGAATTTAAAAATCATTTTTACAAGTGCATTCACCAATCTATTACAATTGAAGAATTTGACTCTGAATGGGAAGCAATGGTTGATAAATATGGGTTGCAAGATAATCAGTGGCTAGAAAAGATATACTCAATTCGATCCAAATGGATTCCTGCATATGTACATCATAATTTCTGTGCTGGAATGTCCACCACTCAAAGGAGTGAAAGTATGAATAAATTTTTTAAGGATTTTTTGAATTCAAGTACTCCATTGAGCAAGTTTCTGACACAATATGAGAAAGCTCTTGATGCACGTTACAACGAGGAAAGGGAGAAAACTGTCAAGACAATGAATTCAAAACCACTTTTGCGAACTTTATATCCCATGGAAGAAGAAGCTTCAAAAATTTATACAGGAAAATTGTTTGAGATATTTCAAGATGAGTTGGTTGGCTCTCAAATGTTTACCACCGAGAAAGTTGAATTTTCTGATGAAGTGGCAACATACAAAGTTCATGAAATTTACAAAGAGAAGCCAAACTATCATGTGGCTTTTCATGTAACTTCGAAAGAAGCAACTTGTACTTGTCACAAGTTTGAATCTTTTGGTATTCTTTGTAGGCATATCTTAACTGTGTTCCTAAAGAAAAAGGTACATTATCTCCCTTCACAGTATGTTCTACAACGATGGACCCGAAATGCCAAGAAAGAAAAATTTGAAGGATTGACAATTGAAGAATTCCAAGAAGGAGGAAACGAAGCTTCTAGCACTTCATTGTTTAATAGTGTTATGGTTCGTTCTCTTGAATTTTCTGAAAGAGCTTCACGATCAAAAAAACATCATGATATTGCAATTCAATGTTTGCAAAATGCAATTGCAAAACTTGATCTAATAGAGCTTGAAGAATCAAATGAGGAGTTTGTTAATTCGACATCTTAA 2061 0.3595 MKDDSMHSKPCHEMTDMDGDFTMVVSNDTHVSALDVKPLNSEPPSKPPLEPIEGMEFKSFEEAKSYYTRYAQNKGFSFRMGRVTKSRTNGMIIGQEILCSKEGFRAKKYVKQGNSSLITHDETRVGCKARLYLKKNNDIWIVSRFVSDHNHQLFSPRSAQSLRVHRKKTKVQKTLTDVLDESGLGKTTSILCTESGGIDNFGSSQQDVINYLSVQRQKQFENRDAQLMLSYFKNCQLKNTGFFYAFQMDAEGKLTNCFWVDSRSRVAYKYFGDVVTFDPTYLKNKYKTPFVPITGVNHHQQSILFGCALLWDEAVESFDWLLSTWLEAMSGVCPKTVITDQHTAITNAVARVFPKVNHHYCMWHIEEKVPEHMDHIYHGHSEFKNHFYKCIHQSITIEEFDSEWEAMVDKYGLQDNQWLEKIYSIRSKWIPAYVHHNFCAGMSTTQRSESMNKFFKDFLNSSTPLSKFLTQYEKALDARYNEEREKTVKTMNSKPLLRTLYPMEEEASKIYTGKLFEIFQDELVGSQMFTTEKVEFSDEVATYKVHEIYKEKPNYHVAFHVTSKEATCTCHKFESFGILCRHILTVFLKKKVHYLPSQYVLQRWTRNAKKEKFEGLTIEEFQEGGNEASSTSLFNSVMVRSLEFSERASRSKKHHDIAIQCLQNAIAKLDLIELEESNEEFVNSTS* 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3685 686 SMART 26again6 566 593 IPR006564 GO:0008270
Mtr1g3685 686 Pfam FAR1 DNA-binding domain 65 154 IPR004330 -
Mtr1g3685 686 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 44 676 IPR031052 GO:0006355
Mtr1g3685 686 Pfam MULE transposase domain 274 367 IPR018289 -
Mtr1g3685 686 PANTHER PROTEIN FAR1-RELATED SEQUENCE 5-LIKE 44 676 - -
Mtr1g3685 686 Pfam SWIM zinc finger 565 590 IPR007527 GO:0008270
Mtr1g3685 686 ProSiteProfiles Zinc finger SWIM-type profile. 555 591 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3685 Mtr-Chr1 48528104 48532823 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Mtr1g3685 MULE 1.9e-28 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3685 - - lang:109336948 947.577