Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3675 ATGACTGGATTTTGGAGTGTGTTTTGCGATGAATCTGGTTGTTCAAAGCCTTGCAGTTATAATGATGTTAAGTTTCTCGTTGATCCTTCCACATGTATCAACCATTTGTTGATATCTTGCTTTGATGTGTTACTACTCATCTTGCTCCTATTTGTAATGATCCAGAAGTCATTCTCAAAACCATATCAGGATCTTGTAAATAGGCAAAGATATTCAACTCTGCAACTAGTTTCTTCCATAACCAATGGTGTTCTTGGGTTGGTGCATTTATTCTTTGGCATTTGGATTTTTGAAGAGAAGTTGAGGAAAAACCGAACTGCACTGCCTCTTGATTTGTGGTTGCTGGAATTATTTCAGGGATTAACATGGTTATTAGTTGGTTTAACATTAAGTCTTAAGTTTAAACAACTTCCAAGAGCATGGTTAAGGCTTTTTTCTATTCTAATCTTCTTAGTTTCTGGTATAAACTGTGTTTTATCCTTGTTTTATGCAATGAGTAGTACGCAACTTCCCCTCAAGGTAGCATTAGATGTTCTATCTTTTCCGGCAGCAATTTTATTGCTTTTATGCACATACAAGGAATCTAAGTATAGGGACGGTGACAGAGAAATCGATGAAAGCCTTTACGCTCCTTTAAATGGTGAGTTGAATAAAAATGATTCTGTTTGCCGTGTGACACTGTTTGCCGAAGCTGGATTTTTCAGTAGGATGTCATTTTGGTGGCTGAATTCATTGATGAAGAGAGGTAAAGAGAATACACTTCAAGACGAAGATGTTCCAAAGGTGAGGGATGAAGATAGAGCAGAAAGTTGTTATTTGCTGTTTCTTGACCAATTGAACAAGCAGAAACAGAAGGATCCACTCTCACAACCATCTGTACTGAAGACAATAGTTTTGTGTCACTCGAGAGAAATTTTGATATCTGGATTCTTTGCATTGCTTAAGGTACTTGCACTGTCTTCTGGACCATTGCTTCTGAATTCCTTTATATTAGTCGTCGAAGGTTTTGAGAGTTTCAAATATGAAGGTTTTGTATTGGCCATAGCACTTTTCTTTATAAAAATTATAGAATCTCTATCTCAAAGGCAGTGGTATTTCCACTCGAGACTCGTCGGTCTCAAAGTTAGGTCTCTTCTAACTGCAGTGATTTATAAAAAGCAACTGAGGTTATCCAATTCTGCTAGATTGACGCACTCTAGCGGTGAAATAATGAATTATGTGACTGTGGATGCTTATAGAATCGGAGAATTTCCTTACTGGTTTCACCAAACATGGACTACTAGCTTCCAGCTATGTATCTCGTTGGTAATACTTTTCCGCGCTATTGGGATAGCTACAATTGCCTCCCTGGTAGTCATAGTTATCACTGTACTTTGTAATGCACCAATTGCAAAGTTACAACACAAGTTTCAAAGCAAACTTATGGTAGCACAAGATGAGAGATTGAAGGCTACTTCTGAGGCTCTTGTGAATATGAAGGTGCTGAAGTTATATGCATGGGAAACCAGCTTTAAAAATTCTATAGAAGGATTAAGGAATGAGGAGCTCAAATGGGTGTCTGCAGTGCAATTGCGAAGGGCATATAACACATTTCTCTTTTGGTCGTCTCCAGTTTTGGTCTCTGCTGCTTCGTTTGGAGCATGCTATTTTCTTAACGTTCCTTTGCATGCAAATAATGTTTTCACTTTTGTAGCAACTTTACGCCTTGTTCAAGATCCGATTAGATCCATCCCAGACGTTATTGGGGTGGTTATTCAGGCAAAAGTTGCGTTCGCTCGGATTCTAAAATTCCTTGAGGCACCTGAATTACAGAGTGAGAAGAGGTGTTCTGATGGCAATATGAGGGGGTCAATTTCAATCAAATCAGCTGAATTTTCATGGGAAGATAATAATGTATCTAAGTCAACATTGAGAAATATAAATTTGGAAGTTAAATCTGGACAAAAGGTCGCGATTTGTGGAGAAGTTGGCTCAGGCAAATCATCTCTCTTATCAGCAATTCTTGGAGAAGTTCCTAACACACGAGGGAAAATTGATGTATATGGGAAGTTTGCGTATGTTTCTCAAACAGCATGGATACAAACAGGTACAATAAGGGATAATGTATTGTTTGGATCACCTATGGATGCTCAAAAATATCAGGAAACTCTTCATAGGTCTTCACTAGTGAAGGACCTTGAGCTGCTTCCCCACGGTGATCTTACTGAAATCGGAGAGAGAGGGGTTAACTTAAGTGGAGGTCAGAAGCAGCGAATTCAACTTGCTCGTGCTCTTTATCAGAATGCTGATATATATATCTTGGATGATCCATTCAGTGCTGTTGATGCACAAACAGCCACAAATTTGTTTAATGAATACATTATGGAAGGGCTTTCTGCGAAGACAGTCTTGCTTGTGACTCATCAAGTTGACTTCCTTCCAGCATTTGATTTTGTTTTGCTGATGTCAGATGGAGAAATCCTACAAGCCGCTCCTTATCACCATTTGTTGACCTCAAGCAAAGATTTTCAAGACCTTGTGAATGCTCACAAAGAGACTGCTGGTTCGAACCGGCTTATGGATGTTACTTCTTCTGGAAGACATTCAAATTCTGCTAAAGAGATTAGAAAAACATACGTGGAGAAGGAAAAGCAATTTGAAGCACTGAAAGGCGATCAATTGATTAAGCAAGAAGAGAGAGAGATAGGAGACCGAGGGTTTAGGCCTTACTTACAGTATCTGAGTCAGAACAAAGGATATGTATACTTCTCCGTGGCTTCTATTTCTCACATTATATTTGTGATTGGTCAGATATTGCAAAACTCTTGGATGGCTGCTAATGTTGACAATCCTAAAGTCACCACTTTGAGATTGATTCTAGTTTACTTGTTTATTGGAGTTACTTCAACAATATTCTTATTGATGAGAAGTCTTTTTACAGTTGCTTTGGGTCTTCAATCTTCAAAGTCTTTGTTTTTACAGCTACTAAACTCCCTTTTTCGTGCACCTATGTCGTTTTATGATTCCACGCCTTTGGGACGGATACTTAGTAGGGTCTCTTCTGATCTCAGCATTGTTGATCTTGATGTTCCATTTGGCCTTCTTTTTGCTGTGGGAGCTACTACCAATTGTTATGCTAACCTAACTGTTTTAGCAGTAGTTACTTGGCAAGTCTTGTTTGTCTCCATACCGATGATTTATTTCGCGCTGCGCTTGCAGGGATACTACTTTGCTACTGCAAAAGAACTGATGCGGATGAATGGCACAACAAAATCCTTTGTAGCTAACCATCTTGCTGAATCTGTTGCTGGTGCCGTGACAATAAGGGCTTTTGAACAGGAAGGTCGTTTTTTTGTAAAGAATCTTGGTTTAATTGATATCAATGCTACTCCTTTCTTTCATAGTTTTGCCGCTAATGAGTGGTTGATTCAACGGTTAGAAACAGTTAGTGCAGTTGTTCTTGCATCAGCTGCACTTTGCATGGTTATACTTCCACCTGGAACATTCTCCTCTGGATTTATTGGAATGGCTCTCTCATATGGTCTTTCACTTAACGCTTCCTTGGTATTTTCAATTCAAAATCAATGCAATATAGCAAATTATATAATATCAGTGGAGAGGCTAAATCAATATATGCATGTACCAAGTGAGGCTCCAGAAAGAATTGAAGGAAATCGCCCTCCGGTGAATTGGCCAGTTGTTGGTAGAGTAGAAATAAAGGAACTACAGATACGGTATAGGCCTGATGCGCCACTAGTACTTCGCGGGATCACATGTACATTTGAAGGAGGACACAAAATTGGTATAGTTGGTCGCACCGGAAGTGGCAAGACCACTCTTATTGGCGCTTTATTTCGTCTAGTGGAGCCAGCGGGTGGAAAAATCATTGTTGATGGCATTGACATCGGTTCCATTGGACTTCATGATTTGAGGTCACGTTTTGGTATTATACCTCAGGACCCTACTCTTTTTAATGGAACAGTCAGATACAATTTGGATCCCTTGTCTCAACACTCTGATCAAGAGATATGGGAGGTTCTTGGGAAGTGTCAGTTGCAAGAGGCTGTCCAAGAGAAAGAAGGTGGTTTAGACTCATCAGTGGTTGAAGATGGGGCAAATTGGAGCATGGGACAACGGCAGTTATTCTGTTTGGGCCGTGCTTTGCTGAGGAGGAGTCGAGTATTGGTGCTTGATGAAGCAACTGCATCAATTGATAATGCAACTGACTTGATTTTACAGAAAACCATTAGGACTGAATTTGCCGATTGTACGGTAATCACAGTAGCTCATAGGATACCAACTGTGATGGATTGCACCAAGGTTCTTTCAATCAGTGATGGAAAACTAGTAGAGTATGATGAGCCAATGAACTTGATGAAGAAAGAAGGGTCTTTGTTTGGGAAGCTTGTCAAAGAATATTGGTCTCATTTTCAATCTGCAGAGTCTCATTAA 4431 0.3958 MTGFWSVFCDESGCSKPCSYNDVKFLVDPSTCINHLLISCFDVLLLILLLFVMIQKSFSKPYQDLVNRQRYSTLQLVSSITNGVLGLVHLFFGIWIFEEKLRKNRTALPLDLWLLELFQGLTWLLVGLTLSLKFKQLPRAWLRLFSILIFLVSGINCVLSLFYAMSSTQLPLKVALDVLSFPAAILLLLCTYKESKYRDGDREIDESLYAPLNGELNKNDSVCRVTLFAEAGFFSRMSFWWLNSLMKRGKENTLQDEDVPKVRDEDRAESCYLLFLDQLNKQKQKDPLSQPSVLKTIVLCHSREILISGFFALLKVLALSSGPLLLNSFILVVEGFESFKYEGFVLAIALFFIKIIESLSQRQWYFHSRLVGLKVRSLLTAVIYKKQLRLSNSARLTHSSGEIMNYVTVDAYRIGEFPYWFHQTWTTSFQLCISLVILFRAIGIATIASLVVIVITVLCNAPIAKLQHKFQSKLMVAQDERLKATSEALVNMKVLKLYAWETSFKNSIEGLRNEELKWVSAVQLRRAYNTFLFWSSPVLVSAASFGACYFLNVPLHANNVFTFVATLRLVQDPIRSIPDVIGVVIQAKVAFARILKFLEAPELQSEKRCSDGNMRGSISIKSAEFSWEDNNVSKSTLRNINLEVKSGQKVAICGEVGSGKSSLLSAILGEVPNTRGKIDVYGKFAYVSQTAWIQTGTIRDNVLFGSPMDAQKYQETLHRSSLVKDLELLPHGDLTEIGERGVNLSGGQKQRIQLARALYQNADIYILDDPFSAVDAQTATNLFNEYIMEGLSAKTVLLVTHQVDFLPAFDFVLLMSDGEILQAAPYHHLLTSSKDFQDLVNAHKETAGSNRLMDVTSSGRHSNSAKEIRKTYVEKEKQFEALKGDQLIKQEEREIGDRGFRPYLQYLSQNKGYVYFSVASISHIIFVIGQILQNSWMAANVDNPKVTTLRLILVYLFIGVTSTIFLLMRSLFTVALGLQSSKSLFLQLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDVPFGLLFAVGATTNCYANLTVLAVVTWQVLFVSIPMIYFALRLQGYYFATAKELMRMNGTTKSFVANHLAESVAGAVTIRAFEQEGRFFVKNLGLIDINATPFFHSFAANEWLIQRLETVSAVVLASAALCMVILPPGTFSSGFIGMALSYGLSLNASLVFSIQNQCNIANYIISVERLNQYMHVPSEAPERIEGNRPPVNWPVVGRVEIKELQIRYRPDAPLVLRGITCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKIIVDGIDIGSIGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHSDQEIWEVLGKCQLQEAVQEKEGGLDSSVVEDGANWSMGQRQLFCLGRALLRRSRVLVLDEATASIDNATDLILQKTIRTEFADCTVITVAHRIPTVMDCTKVLSISDGKLVEYDEPMNLMKKEGSLFGKLVKEYWSHFQSAESH* 1477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3675 1476 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1220 1457 IPR027417 -
Mtr1g3675 1476 CDD ABC_6TM_ABCC_D2 916 1205 IPR044726 GO:0140359
Mtr1g3675 1476 PANTHER ABC TRANSPORTER C FAMILY PROTEIN 70 1476 - -
Mtr1g3675 1476 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 70 1476 - -
Mtr1g3675 1476 ProSitePatterns ABC transporters family signature. 744 758 IPR017871 GO:0005524
Mtr1g3675 1476 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 613 842 IPR027417 -
Mtr1g3675 1476 SUPERFAMILY ABC transporter transmembrane region 295 602 IPR036640 GO:0005524|GO:0016021
Mtr1g3675 1476 Gene3D - 1214 1465 IPR027417 -
Mtr1g3675 1476 Pfam ABC transporter 637 771 IPR003439 GO:0005524
Mtr1g3675 1476 Pfam ABC transporter 1247 1395 IPR003439 GO:0005524
Mtr1g3675 1476 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 924 1193 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mtr1g3675 1476 CDD ABC_6TM_ABCC_D1 307 594 IPR044746 GO:0140359
Mtr1g3675 1476 Gene3D - 613 848 IPR027417 -
Mtr1g3675 1476 Pfam ABC transporter transmembrane region 305 571 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mtr1g3675 1476 Pfam ABC transporter transmembrane region 918 1156 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mtr1g3675 1476 Gene3D ABC transporter type 1, transmembrane domain 879 1211 IPR036640 GO:0005524|GO:0016021
Mtr1g3675 1476 Gene3D ABC transporter type 1, transmembrane domain 277 603 IPR036640 GO:0005524|GO:0016021
Mtr1g3675 1476 SMART AAA_5 1256 1448 IPR003593 -
Mtr1g3675 1476 SMART AAA_5 646 819 IPR003593 -
Mtr1g3675 1476 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1232 1464 IPR003439 GO:0005524
Mtr1g3675 1476 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 620 842 IPR003439 GO:0005524
Mtr1g3675 1476 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 306 586 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mtr1g3675 1476 SUPERFAMILY ABC transporter transmembrane region 913 1210 IPR036640 GO:0005524|GO:0016021
Mtr1g3675 1476 CDD ABCC_MRP_domain1 618 819 - -
Mtr1g3675 1476 Coils Coil 865 885 - -
Mtr1g3675 1476 CDD ABCC_MRP_domain2 1228 1448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3675 Mtr-Chr1 48453841 48461146 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3675 1226 1476 Calmodulin-binding Proteins AT2G36910 29.572 1.97e-28 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3675 K05666 - gmx:100811468 2397.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3675 1 48453841 48461146 Mtr1g3675 1 48453841 48461146 ECH
Mtr6g0941 6 12257112 12264119 Mtr1g3675 1 48453841 48461146 PCT