Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3671 ATGGCAGATCTTGTTGATCACAGGAATGCAGACCGTCACATTCACCAGGCTCTGATTGCTTTGAAAAAGGGTGCTCAATTACTTAAATATGGTCGTAAAGGAAAACCGAAGTTTTGTCCATTTAGACTTTCCAAGGATGAGTTGTCATTATTCTGGTTTTCGAGTAGCGAAGAAAGAAGTCTGAAACTATCTTCTGTCTCGAAAATTATTCCTGGACAAAGAACTGCTGTTTTCCAGCGATTTCCGCGTCCTGAGAAGGATTATTTATCTTTTTCACTTATTTACAACCACGGGAAGCGATCTCTTGATTTGATTTGCAAGGATAAAGTTGAGGCAGAAGTGTGGATTGCTGGTCTCGGGGCATTGATATCTTCTGGTCAAGGTGGGCGGTCCAAAATTGATGGATGGTGTGATGGAGGCCTGTATCTTGATGATGGTAAAAATTTGACTTCAAACAGTCCTAGTGAAAGTTCAGTTCGTGCTTCTCAAGACATCAGTTCTCCCGACATTTCTGCCAGCATACCAAACGTTTCTCCGAAGTCCTTTCATCCTGAAAATACCGTAAATTTTGAAAAGTCACATGCACCAGCAAACTCACCAAATATGCAAGTGAAAGGATCTAGTTCAGATGTTTTTCGTGTTAGTGTTTCAAGTGCCCCCAGTACGTCCAGTCATGGGTCTGCACCGGATGATTATGATGCTCTTGGGGATGTATACATATGGGGGGAGGTTATCTCTGAGAATGTTGTAAAAGTTGGAGCTGATAAAAATGTCAGTTATTGTAGCCCGAGAACTGACATTCTCCTCCCGAAGCCACTCGAGTCCAATGTGGTTTTGGATGTACTTCAAATAGCATGCGGTGTTAAACATGCTGCTCTAGTCACAAGGCAAGGTGAAATGTTTACATGGGGTGAAGAATCTGGTGGACGTCTTGGCCATGGTGTTGGGAAGAATGTGGTTCAACCTTGTCTAGTTGAAGCACTGGCTTCCTCAACTGTTGATTTTGTCGCCTGTGGTGAGTTTCATACCTGTGCTGTTACAATGGCCGGGGAAATATATACATGGGGCGACGGCACTCACAATGCTGGACTTCTTGGTCATGGAACCGATGTTAGTCATTGGATACCGAAGAGAATCGCGGGTCCACTAGAGGGGCTTCAGGTGGCCTTTGTCACTTGCGGTCCATGGCATACAGCCTTGATAACTTCAACTGGGCAGCTCTTTACATTTGGTGATGGAACATTCGGGGTCCTCGGTCATGGAGATAGAGAAAATATTTCATATCCTAGAGAAGTAGAATCCTTATCTGGGTTGAGGACAGTATCTGTTGCATGTGGAGTGTGGCATACTGCAGCAATTGTAGAGGTCATTGTGACACAATCCAGTGCAAGTATATCTTCGGGTAAATTGTTTACTTGGGGAGATGGAGATAAGAATCGCCTAGGACACGGAGACAAGGATGCCAGGCTCGAACCAACCTGTATATCTGCTCTTATCGATTACAATTTTCATAGAATTGCTTGTGGGCACAGTTTGACGGTAGGCCTGACAACGTCCGGACGTGTTTTTACAATGGGCAGCACTGTTTACGGCCAGCTCGGGAATCCCCAGTCTGATGGAAAACTTCCCTGTTTGGTTGAAGACAAGCTTGCTGGAGAATGCGTTGAAGAAATTGCATGTGGGGCTTATCATGTTACTGTTTTAACGTCCAGGAATGAAGTTTATACTTGGGGGAAAGGTGCAAATGGAAGATTGGGTCATGGAGACGTTGAAGATCGAAAAACACCAACTTTGGTTGAAGCCTTGAAGGATAGACATGTGAAATATATTGCATGTGGTTCAAATTACTCAGCTGCCATATGCCTACATAAGTGGGTATCTGGTGCCGAGCAGTCTCAGTGCTCTACCTGTAGACAAGCGTTTGGATTCACTAGAAAGCGTCACAACTGTTATAATTGTGGACTTGTGCACTGCCATTCATGCAGTTCAAGGAAAGCATTAAGAGCAGCCCTTGCTCCTAATCCTGGGAAGCTGTATCGTGTTTGTGATACTTGTTATGTAAAATTGAACAAGGTTGCAGAATCTAGCATTAACAACCGGAGGAATGCAATGCCACGTTTTCCAGGTGAAAACAAGGACAGATTAGAAAAGTCTGAGCTAAGATTGTCAAAGCCAGCCGTGCCTTCGAATATGGATTTGATAAAGCAGTTAGATAGTAAGGCAGCCAAACAAGGGAAAAAGGCTGATATGTTCTCTCTGGCTCACACCACGCAAGCTCCATCTTTGCTACAGCTGAAAGATGTTGTCTTGTCTACTGCTATGGACCTTAAACGCACTGTTCCAAGACCTGTTATTACGCCATCTGGAGTGAATTCCAGGTCCGTGTCACCTTTCTCTAGAAGATCGAGCCCCCCTCGTTCAGCTACGCCCATTCCGACAACCTCCGGGCTTGCCTTCTCAAAAAGCATTACTGATAGTTTGAAGAAAACAAACGATCTTTTGAATCAAGAAGTGTTGAAGTTGCGTTCTCAGGTTGAGACCCTGAGACAGAGATGTGAGCTGCAAGAGTTAGAGCTTAAAAAGTCAGCAAAAAAGACTCAAGAAGCTATGGTACTGGCTACTGAGGAATCTGCCAAATCCAAGGCTGCAAAAGAAGTTATTAAGTCACTTACGGCACAGCTCAAAGATCTGGCAGAGAGGCTTCCTCCTGGTGCATATGATACTGATAACATCAGACCAGGGAACCTGCGTAACGGTTTCGTCGAGTCAAATGGCATCCACCATCCAGACTCAAACGGCGAGCAGGGCCACACAAGGGCAGAGTCGATCAGTGGCTCCAGCTTGGCTTCTTTAGGCCTTGAATCTTCTCTGATGAATAGAACTGAAAGGAATTCAACTGGAAGCTATGCAACTAATCTTTACCAGCAAAGCCGAGCATCTGTGACCTCTAATGGGACAGATGATTACCGAGATGACAGATTGCCAAATAGTGGCAGTATGATTCAGGCAACCAACAGTAGTGTGTCGGATACTTTTGATGGTAGGAATTCTGGGAATTTCCGTGATGATGAGAGTGGTTCCAGATCAAGGAATGATGTCTTGGCTGCTAATAGTAATCAAGTTGAGGCAGAATGGATTGAACAGTATGAACCTGGTGTCTATATAACTCTGGTTGCCATGCGTGATGGAACAAGAGATCTGCGGAGAGTGCGTTTCAGCCGGAGAAGATTTGGAGAGAATCAAGCAGAGACTTGGTGGTCAGAGAATCGCGATAGGGTATATGAAAGGTACAATGTTCGAAGCTCAGACAAGTCGTCGAGCCAGGCATCACAGAGGGCAGAGAGTGCTGGTTCACCTGTTCTATAA 3366 0.4489 MADLVDHRNADRHIHQALIALKKGAQLLKYGRKGKPKFCPFRLSKDELSLFWFSSSEERSLKLSSVSKIIPGQRTAVFQRFPRPEKDYLSFSLIYNHGKRSLDLICKDKVEAEVWIAGLGALISSGQGGRSKIDGWCDGGLYLDDGKNLTSNSPSESSVRASQDISSPDISASIPNVSPKSFHPENTVNFEKSHAPANSPNMQVKGSSSDVFRVSVSSAPSTSSHGSAPDDYDALGDVYIWGEVISENVVKVGADKNVSYCSPRTDILLPKPLESNVVLDVLQIACGVKHAALVTRQGEMFTWGEESGGRLGHGVGKNVVQPCLVEALASSTVDFVACGEFHTCAVTMAGEIYTWGDGTHNAGLLGHGTDVSHWIPKRIAGPLEGLQVAFVTCGPWHTALITSTGQLFTFGDGTFGVLGHGDRENISYPREVESLSGLRTVSVACGVWHTAAIVEVIVTQSSASISSGKLFTWGDGDKNRLGHGDKDARLEPTCISALIDYNFHRIACGHSLTVGLTTSGRVFTMGSTVYGQLGNPQSDGKLPCLVEDKLAGECVEEIACGAYHVTVLTSRNEVYTWGKGANGRLGHGDVEDRKTPTLVEALKDRHVKYIACGSNYSAAICLHKWVSGAEQSQCSTCRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPNPGKLYRVCDTCYVKLNKVAESSINNRRNAMPRFPGENKDRLEKSELRLSKPAVPSNMDLIKQLDSKAAKQGKKADMFSLAHTTQAPSLLQLKDVVLSTAMDLKRTVPRPVITPSGVNSRSVSPFSRRSSPPRSATPIPTTSGLAFSKSITDSLKKTNDLLNQEVLKLRSQVETLRQRCELQELELKKSAKKTQEAMVLATEESAKSKAAKEVIKSLTAQLKDLAERLPPGAYDTDNIRPGNLRNGFVESNGIHHPDSNGEQGHTRAESISGSSLASLGLESSLMNRTERNSTGSYATNLYQQSRASVTSNGTDDYRDDRLPNSGSMIQATNSSVSDTFDGRNSGNFRDDESGSRSRNDVLAANSNQVEAEWIEQYEPGVYITLVAMRDGTRDLRRVRFSRRRFGENQAETWWSENRDRVYERYNVRSSDKSSSQASQRAESAGSPVL* 1122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3671 1121 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 443 453 IPR000408 -
Mtr1g3671 1121 CDD PH_PLC_plant-like 16 124 - -
Mtr1g3671 1121 MobiDBLite consensus disorder prediction 784 815 - -
Mtr1g3671 1121 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 468 519 IPR000408 -
Mtr1g3671 1121 MobiDBLite consensus disorder prediction 967 984 - -
Mtr1g3671 1121 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 236 297 IPR000408 -
Mtr1g3671 1121 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN 13 1104 - -
Mtr1g3671 1121 Coils Coil 831 865 - -
Mtr1g3671 1121 MobiDBLite consensus disorder prediction 905 944 - -
Mtr1g3671 1121 MobiDBLite consensus disorder prediction 967 1033 - -
Mtr1g3671 1121 CDD FYVE_like_SF 633 686 - -
Mtr1g3671 1121 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 13 1104 - -
Mtr1g3671 1121 Coils Coil 880 900 - -
Mtr1g3671 1121 SUPERFAMILY FYVE/PHD zinc finger 624 695 IPR011011 -
Mtr1g3671 1121 Gene3D - 460 636 IPR009091 -
Mtr1g3671 1121 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 628 690 IPR017455 -
Mtr1g3671 1121 Gene3D - 13 129 IPR011993 -
Mtr1g3671 1121 SMART fyve_4 622 691 IPR000306 GO:0046872
Mtr1g3671 1121 MobiDBLite consensus disorder prediction 928 944 - -
Mtr1g3671 1121 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 572 623 IPR000408 -
Mtr1g3671 1121 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 405 456 IPR000408 -
Mtr1g3671 1121 ProSiteProfiles BRX domain profile. 1043 1098 IPR013591 -
Mtr1g3671 1121 Pfam Transcription factor regulating root and shoot growth via Pin3 1042 1097 IPR013591 -
Mtr1g3671 1121 Pfam Regulator of chromosome condensation (RCC1) repeat 467 514 IPR000408 -
Mtr1g3671 1121 Pfam Regulator of chromosome condensation (RCC1) repeat 405 453 IPR000408 -
Mtr1g3671 1121 Pfam Regulator of chromosome condensation (RCC1) repeat 298 346 IPR000408 -
Mtr1g3671 1121 Pfam Regulator of chromosome condensation (RCC1) repeat 350 401 IPR000408 -
Mtr1g3671 1121 Pfam Regulator of chromosome condensation (RCC1) repeat 519 567 IPR000408 -
Mtr1g3671 1121 Pfam Regulator of chromosome condensation (RCC1) repeat 573 620 IPR000408 -
Mtr1g3671 1121 SUPERFAMILY RCC1/BLIP-II 235 625 IPR009091 -
Mtr1g3671 1121 MobiDBLite consensus disorder prediction 148 206 - -
Mtr1g3671 1121 PRINTS Chromosome condensation regulator RCC1 signature 281 294 IPR000408 -
Mtr1g3671 1121 PRINTS Chromosome condensation regulator RCC1 signature 300 316 IPR000408 -
Mtr1g3671 1121 PRINTS Chromosome condensation regulator RCC1 signature 350 366 IPR000408 -
Mtr1g3671 1121 PRINTS Chromosome condensation regulator RCC1 signature 391 407 IPR000408 -
Mtr1g3671 1121 PRINTS Chromosome condensation regulator RCC1 signature 407 421 IPR000408 -
Mtr1g3671 1121 PRINTS Chromosome condensation regulator RCC1 signature 509 527 IPR000408 -
Mtr1g3671 1121 PRINTS Chromosome condensation regulator RCC1 signature 567 588 IPR000408 -
Mtr1g3671 1121 MobiDBLite consensus disorder prediction 997 1015 - -
Mtr1g3671 1121 Pfam FYVE zinc finger 624 690 IPR000306 GO:0046872
Mtr1g3671 1121 MobiDBLite consensus disorder prediction 1099 1121 - -
Mtr1g3671 1121 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 391 401 IPR000408 -
Mtr1g3671 1121 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 298 349 IPR000408 -
Mtr1g3671 1121 Pfam Transcription factor BRX N-terminal domain 875 909 IPR027988 -
Mtr1g3671 1121 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 350 404 IPR000408 -
Mtr1g3671 1121 MobiDBLite consensus disorder prediction 1100 1121 - -
Mtr1g3671 1121 Gene3D - 185 459 IPR009091 -
Mtr1g3671 1121 MobiDBLite consensus disorder prediction 785 815 - -
Mtr1g3671 1121 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 637 697 IPR013083 -
Mtr1g3671 1121 SUPERFAMILY PH domain-like 14 123 - -
Mtr1g3671 1121 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 284 294 IPR000408 -
Mtr1g3671 1121 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 520 571 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3671 Mtr-Chr1 48411897 48423102 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3671 884 1114 Major Intrinsic Protein MIP AT1G31880 27.984 1.70e-15 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3671 - - gmx:100783270 1854.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3671 1 48411897 48423102 Mtr1g3671 1 48411897 48423102 ECH
Mtr6g0954 6 12603627 12613219 Mtr1g3671 1 48411897 48423102 PCT