Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3665 ATGGATAGTATTAGTGCTACAAAGACAAACAATAAAATAAGTTTTGATTTGAATGAATATCCAATAGAAGATATTTTTATAGATAATGGTTCTTCAGAAATAATTAGTGAGCAACTTGATCATAATTTAGTGGAGAATGTTGAGAAAGAAAACTCTGTTTTAAGTCTGAATAATGCAACAAATGAAGAAGTCGATAAAGACGGAACTGAGACAAATTGTGTTCCATTTGTTGGTCAAATTTTTCTTAGTGAAGAAGAAGCCTATGTCTTTTATAAGAGATATGCTTATCAACAAGGGTTCTCAATTAAAAAAGGTAGATTCGTAAAAAAGAATGGGGTTATTTGCAGACGTGATATTTTTTGTCATCGTGAAGGTAAAGCATCCTTGAAAATAATGGAACCATCAAAAGAGCAGAGAAATAGACAATCCTCAAAGTGTGAATGCAAAGCTCATTTACGAATCAAATTACAAAAATCTCATGATATATTTCCAACTGAGTGGCGAGTCACATCGTTTATTGTCAAACACAACCATGGTTTGCTAACCCAAACAGAGGTGCGTTTTTTACCGGCTTATCGAATTATCTTAGAAGATGACCGTGAACGCATTTTCTTATTAAAAGAAGGTGGGCTTTCGGTTAGACAAATAATGCGGGTTATAGAACTAGAGAAAAATGTGAAGCATGGTTATCTTCCATATACTGAAAAGGACATTCGCAATCTTTATGTGAAAGCTAATAAAAAAACTGAAGGAAGTGATGTCATGGATCTTTTGAAGTATTGTGAGGGTGCAAAAAAAACTTCCTCTAAATTTCAATATGCTTATACACTTGATGAAGAAAGAAGGTTAGAGCATATTTTTTGGTCCTCGGCTTCTTGTTTTGATTGGTACCAAAAATACGGTGATGTTGTTGTATTTGATACTACATACAAGGTCAATTCTTATGAAATGCCATTTGGGATTTTTGTGGGTATGAATAATCATGGAAAGACTATACTTTTTGGATGTGCACTCTTACGGAACGAAACAGTGTATGCATTTCGTTGGCTAATGAAGACTTTTATATCTTTGATGAAGAAGCCACCAACGACTATACTAACCGATCAAGATCCATGGATGAAAGAAGCAATCTCAAAAGAGTTTCCATCGACAAAACATAGTTTCTGCATATGGCACATAACTTTCAAGTTTAGTTCTTGGTTTAATGCTCTACTTCGAGACAAATATGCAAAATGGTGTTCTGAATTTTATGAGTTGTATAAGTTAGAGACATGTGAAGAATTTGAGCATCAATGGCCAGAAGTTGTTGCTAAGTATAACTTGCAGTCAAATAAACATGTGAAAGGATTGTATGAAATCAGAAATGATTGGGCACTCGCTTATCTTCGTGATCATTTCTTTGGTGGAATGACAACCACAGGAAGATCGGAGAGTATTAATGCTTTCATTAAAAGATTCATCAATTCTCACACAAGTTTAACTGACTTTGCAAAGCAGGTTGATGTAGCAATTGATGATATTAAGCAAAAAGAAGACCACGATATAATGTTAGAGAAGTGCAAAGGATCAAATATGAAGTTGATGTCACCTTTACAAGAGCAAGCTCATAGTGTTCTCACTCGTTTTTCTTTTCAAAAGTTTCAAGAGGAGTTTGCGAGGTCCTCACAATATTCAATTGATCATGAAAATGGTAATGTGTTTGTCGTGCGGTTTTATAAAGATATTAATAGTAGGAAACATGTAGTGTTTTGGGATGGTAAGGTAGCTACATGTAGTTGCAAGCTCTTTGAATTTTGGGGGATATTATGTCGTCATATTCTTAGTATTTTTCTTCATAAAGATTGTCATGAAATCCCTTCTAACTACTTGCCTTCACGGTGGTTGCTTCAAGTATCATACGATGATAATGATGTGGAGTCTCAAGTTAATGTTGTTGGTGAGGAGCAAGTACTAGATTGTAACAATGAACCTCAACCACAACATGTTGTTCATTGTCCTCCAAAATCCAAACCTAAAGGTCGTCCCAAACGACGACGACTTAAAGGTGGAAAAGAGCTATCACATAATATGAACACTTGTGGATTATGCAGAGGTTTAGGACATAACATTGCCACATGCCCACTTAAGGAAAAGAAAAAGGCAAACAAGAAAAAGAAAATTTGTGACGATCCAAATTTAAATCCAATTCTCCTTCCAAAAGTTTAG 2205 0.3474 MDSISATKTNNKISFDLNEYPIEDIFIDNGSSEIISEQLDHNLVENVEKENSVLSLNNATNEEVDKDGTETNCVPFVGQIFLSEEEAYVFYKRYAYQQGFSIKKGRFVKKNGVICRRDIFCHREGKASLKIMEPSKEQRNRQSSKCECKAHLRIKLQKSHDIFPTEWRVTSFIVKHNHGLLTQTEVRFLPAYRIILEDDRERIFLLKEGGLSVRQIMRVIELEKNVKHGYLPYTEKDIRNLYVKANKKTEGSDVMDLLKYCEGAKKTSSKFQYAYTLDEERRLEHIFWSSASCFDWYQKYGDVVVFDTTYKVNSYEMPFGIFVGMNNHGKTILFGCALLRNETVYAFRWLMKTFISLMKKPPTTILTDQDPWMKEAISKEFPSTKHSFCIWHITFKFSSWFNALLRDKYAKWCSEFYELYKLETCEEFEHQWPEVVAKYNLQSNKHVKGLYEIRNDWALAYLRDHFFGGMTTTGRSESINAFIKRFINSHTSLTDFAKQVDVAIDDIKQKEDHDIMLEKCKGSNMKLMSPLQEQAHSVLTRFSFQKFQEEFARSSQYSIDHENGNVFVVRFYKDINSRKHVVFWDGKVATCSCKLFEFWGILCRHILSIFLHKDCHEIPSNYLPSRWLLQVSYDDNDVESQVNVVGEEQVLDCNNEPQPQHVVHCPPKSKPKGRPKRRRLKGGKELSHNMNTCGLCRGLGHNIATCPLKEKKKANKKKKICDDPNLNPILLPKV* 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3665 734 ProSiteProfiles Zinc finger SWIM-type profile. 567 614 IPR007527 GO:0008270
Mtr1g3665 734 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 16 627 IPR031052 GO:0006355
Mtr1g3665 734 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 624 692 IPR031052 GO:0006355
Mtr1g3665 734 Pfam MULE transposase domain 303 394 IPR018289 -
Mtr1g3665 734 Pfam FAR1 DNA-binding domain 90 181 IPR004330 -
Mtr1g3665 734 MobiDBLite consensus disorder prediction 667 683 - -
Mtr1g3665 734 PANTHER PROTEIN FAR1-RELATED SEQUENCE 11 16 627 - -
Mtr1g3665 734 PANTHER PROTEIN FAR1-RELATED SEQUENCE 11 624 692 - -
Mtr1g3665 734 Pfam SWIM zinc finger 581 613 IPR007527 GO:0008270
Mtr1g3665 734 SMART 26again6 589 616 IPR006564 GO:0008270
Mtr1g3665 734 MobiDBLite consensus disorder prediction 662 683 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3665 Mtr-Chr1 48323078 48325510 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Mtr1g3665 MULE 5e-25 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3665 - - gsj:114409893 1189.48