Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3662 ATGAATCTCATCGGAGTTCCGCCGGATACCTCTGATAGCAATAACACCATCTATTTCGATGAAACATTGGATCACTTGCTTCACCAGGAGTTTAATGATCTCGATTTCGTTGAATTCTCATTACAGCTTCCCTCACCGCCGCCAAACACGGTTGAGATGCCGCCCATTGATTTGATTCCTGCACCGGCAGAGCCACCACAACTTCCGAGCTTGATTGTGGCAGGCGCCGGAGCTAACACCGACGGAAACAGTGGTGGAGGGAATGTGATGACTGTTCGCAGTGATAGAAACGTTGGTGGGCCCTCAACATCATTGTCTTTAAAGAAGAAGGCCATATCACCTGAAATGCTTGCGGAGATTGCAGCCGTCTATCCTAAGAAAGCAAAGAGGATTCTTGCTAATAGGGATGCTGCTAAAAGATCTAAGGAGAAGAGGAGACATTATGAAGAAGAGTTGGTAAAGATGGTGGAGTCCCTTCAGATTCAAGCAGATTACGCAACTGCAGAGCGTGTGATGGCAATGAATGAAGCTACTGATTTAGCAGACGGGAACAATAAGATCAAAGAACAGATACTGTCTGCCATTGAAAATCAAGAAAAGAAGAGAGCTTTCTTAGAAAAGTTAAAAGAAGAAAGGGATATCCTCAAGATGCAAAATCAAGAACAAACAACTATCATTGATTCTTCTTCTGGTGAACCACCCTCTCAATCCCAGAGTCATCAGGTTCCTCACCAGTCACAACTCTACATACCGCAGTTGCCGCCTCTAAGTCCTGATCCACCATCTCCCATCGTTGGTCCGCCTTTTGATGATCATTTTATCGGCACCGACTTTTCAAACTACAATCCGTTTGACTAG 858 0.4499 MNLIGVPPDTSDSNNTIYFDETLDHLLHQEFNDLDFVEFSLQLPSPPPNTVEMPPIDLIPAPAEPPQLPSLIVAGAGANTDGNSGGGNVMTVRSDRNVGGPSTSLSLKKKAISPEMLAEIAAVYPKKAKRILANRDAAKRSKEKRRHYEEELVKMVESLQIQADYATAERVMAMNEATDLADGNNKIKEQILSAIENQEKKRAFLEKLKEERDILKMQNQEQTTIIDSSSGEPPSQSQSHQVPHQSQLYIPQLPPLSPDPPSPIVGPPFDDHFIGTDFSNYNPFD* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3662 285 MobiDBLite consensus disorder prediction 225 252 - -
Mtr1g3662 285 MobiDBLite consensus disorder prediction 225 285 - -
Mtr1g3662 285 Pfam Basic region leucine zipper 126 160 IPR004827 GO:0003700|GO:0006355
Mtr1g3662 285 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 73 248 - -
Mtr1g3662 285 PANTHER BASIC-LEUCINE ZIPPER (BZIP) TRANSCRIPTION FACTOR FAMILY PROTEIN 73 248 - -
Mtr1g3662 285 SUPERFAMILY Leucine zipper domain 126 178 IPR046347 GO:0003700|GO:0006355
Mtr1g3662 285 Coils Coil 188 225 - -
Mtr1g3662 285 CDD bZIP_plant_GBF1 127 176 IPR045314 GO:0003700|GO:0006355
Mtr1g3662 285 MobiDBLite consensus disorder prediction 253 267 - -
Mtr1g3662 285 SMART brlzneu 122 186 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3662 Mtr-Chr1 48301840 48303684 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3662 78 221 bZIP Transcription Factor Family AT2G40620 38.356 1.06e-17 80.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Mtr1g3662 bZIP_2 5.8e-06 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3662 - K20557 mtr:MTR_1g099030 526.939