Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3659 ATGGGGAAGAAGAAGCCAGCAATCCGCGACGACGAGAATCCTCCGCCGCAACAAGGCGGTGGCAAATCGAAGAAGAAGGCTCCGGTTATCGATGACGATGAATATTCTATCGGAGTGGAAGTGTCTGAGGATGCGATTCCGGTTGCGGTGGAAGAGAAACCCGTGAAAAAGAAAGGTAAGAAAGGTAATGCTAAATCGAAAAAAGATAATGATGATGATTTTGATGATGCTGTTGTTGTTGATGATGATGATGTGAATGAAATTGTTTTTGCTGGGAAGAAAAAAGGGAAATCGAAAAAAAGTAGTGGTGGAAGTGTGTTTGCTTCTGGATTTGGTGTGCTTGGTGATGAGGAGGATGTTGATAATGATGATGATGAGAAATCGGAGGTAACCGGTGAGGGTGATGACGATGAGGATGAACCTGTTGTTAGTTTTACAGGGAAGAAGAAATCCTCGAAGGGTTCTAAGAAAGGTGGTGGTGGAAGTGTGTTTACGGCTGCGGCTGGTTTTGGTTTGCTTGGGGATGATGAAGATGTTGATAATGATGATGGTGAGGAGAAATCGGATGAGGATGAACCAGTTGTTTTTTCGGGGAAGAAGAAGCCCTCAAAGGGTTGGAAGAAAGGGGCAAGTAGTTTGTTCAGTGCATTAGATGAGAATGATGATGGAGAGGAGGAGAGTAAGAATGAAAAGGTAGAAGATGATGATGATGAACCAATCACTTTCTCAGGTAAGAAAAAGAAGTCATCAAAGGGTTCGAAGAAGGCGGGTGTTTCATTGAGTAAAGCTATTCCGGAGGAGGATAGTGTTTCTGTATCTGAGTCTGCTAAAGGTGGTGATTATGAGAAAGATGAGGATGATGTTTCTTTTGCATTTACCGGTAAAAAGAAGTCTTCTAAAAAGAAAAGTGGTAGTGCTGCTGCCAAAGTGAGTGATGAAATTGAGTTCGGGAGTGAAAGTGTGAATGTTGTTGAGGCTGAGAAGCCTAGTGTTGACAATGGTAATATAAGTAAGAGTGAAGAGGTCGTTGGAACTTCCAAGAATAAGAAAAAGAATAAGAAGAAGAGTGGGAGGACTAAAGAAGAGGAGGATGATTTAGATAAGCTTCTCGCAGAGCTTGGCGAAGCCCCTGCTACAGCACAACCTGCTGCAGCTCCTCCTCAGCAAGATGATAAAGTTCAGCCGGTTCCTGTAGTAGGTTCTGCCCCTGGTGCTTCAGGAGAAAAGGAGGGAGAAGATGAGACTGTAGAGTCAGCTGCCACAAAAAAGAAGAAAAAGAAGAAGGAAAAAGAAAAGGAGAAGAAGGCAGCGGCAGCAGCAGCTGGAAGTGCACCGGTAGTTGAAGCTGTAGAAGAGAAAGCTGAGGCAATTGAACCGAAGAAAAATGATTCGAAGACCAAAGCGGCTGACAAGAAAGTGCCAAAGCATGTTAGGGAGATGCAAGAACTACTGGCTAGAAGAAAAGAGGCTGAAGAAAAAAAGAAAAAGGAAGAGGAAGAGAAGCAAAGGAAAGAAGAAGAGGAGCGACGAAGGATAGAGGAACTTGAGAGACAGGCAGAAGAGGCTAAACGTAGAAAGAAGGAAAAAGAAAAGGAGAAACTCCTGAAAAAGAAGCAGGAAGGTAAATTGTTAACTGGTAAGCAGAAAGAAGAAGCCCGGCGTTTGGAGGCAATGAGGAGGCAGATTCTCAATAGCACAGGGGGTGTGACTCTTCCTGGCGCGGACACCGGTGGACCATCTAAAAAACCTATTTATCAGACAAAGAAAGGGAAATCAACGAATCGAAATCATAACGGTGCCGCTGCTGTCAAGACAGAGGAAAATGTTGAAGCAACGGAAACTACTGCTGATCTAGATACAGAGGAACTGGAAAAGGTTGAAGAAGTGGAGTCGGTGCAGATGGAGGACAAAGTTGAACTTCCTGAAGTTGTTGAAGAAGTAGTGGATGAAGATGATGATGTTGAGGATGAATGGGACGCAAAAAGCTGGGATGATGTCAATCTGAATGATAGGGGTGCATTTGCTGATGAAGAAGTTGACTCCGAGCCTGAACCAATTGTCAAAAAAGAGATTAAAAATGGCATACCTTCTAAAAATGCTGCAGGTGCTACAAATAAACCTGTTACAAAGCCTGCAGCTGAAGAAACTGAAGATAGAAAACAGGCTAAAGTTGTGGTTGAGGATAAAAAGAAAAAGCACGATCCACAACTGTCAGCCGTGCCTTCTAAGCCGAGTGAAGGGAACCTTCGGTCGCCAATTTGCTGCATCATGGGTCATGTGGACACTGGCAAAACCAAGCTTCTGGATTGCATTCGAGGTACCAATGTTCAAGAAGGTGAGGCTGGTGGTATCACCCAACAGATTGGTGCAACGTACTTTCCTGCTGAGAACATACGTGAAAGAACCAAGGAACTGAAAGCTGATGCAACACTGAAAGTTCCCGGTCTACTGGTTATTGATACCCCAGGACACGAGTCATTCAATAACTTGAGGTCTCGGGGTTCAGGTCTATGTGATATTGCAATTTTGGTTGTGGACATTATGCATGGCTTAGAGCCACAAACTATAGAGTCACTCAATCTATTAAAAATGAGGAACACTGAATTCATCGTTGCATTGAATAAGGTTGACAGGCTTTATGGCTGGAAAACATGTCGCAATGCTCCAATTCGTAAAGCAATGACGCAGCAGTCTAAGGATGTTCAAAATGAGTTCAATATGAGGGTCACTCAGATCGTTACCCAGTTCAAGGAACAAGGGCTAAATACTGAATTGTATTACAAAAACAAAGAAATGGGCGAAACATTCAGCATTGTGCCTACAAGTGCAATAAGTGGTGAAGGAATCCCGGATATGTTATTACTATTAGTTCAGTGGACCCAAAAGACCATGACCGAGAAGCTTACATACAGCGAAGAAGTGCAGTGTACCGTTTTGGAAGTCAAGGTTATTGAAGGCCATGGAACTACTATTGATGTTGTTTTAGTTAATGGTGTTCTTCATGAAGGGGATCAAATAGTTGTATCTGGAATGCAGGGTCCAATTGTTACCACAATTCGAGCTTTATTGACACCTCATCCAATGAAGGAACTTCGTGTTAAGGGATCGTATATCCATCACAAAGAAATCAAAGCTGCTATGGGCATCAAGATCACTGCCCAGGGGCTTGAACATGCTATTGCTGGAGCTAGTTTATATGTGGTAAAGCCTGATGATGATTTGGAATATATTAAAAAAGCAGCTTTGGAAGACGTGGAGTCGGTCTTGAGCAGGATTGACAGGAGTGGTGAGGGCGTTTGTGTCCAGGCATCTACCCTTGGCTCATTGGAAGCATTATTGGAGTTTTTGAAAACTCCAGAAGTGAATATTCCTGTTAGTGCTATAAACATAGGCCCGGTACATAAGAAGGATGTGATGAAGGCCAGTGTGATGCTTGAAAAGAAACGAGAATATGCTACTATATTGGCATTTGATGTCAAAGTCACCCCTGAAGCTAGGGATCTTGCAGAGGAATTGGGTGTGAAGATTTTTATAGCCGATATCATTTATCATCTATTTGATCAATTTAAGGCTTACATGGACAACATTAAGGAGGAGAAAAAGAAAGAATCTGCGGATGAGGCAGTCTTCCCATGTGTTCTGAAGATCTTACCAAATTGTGTCTTCAACAAGAAGGATCCAATTGTTTTGGGAGTTGATATCCTTGAAGGCATTTTAAAGATTGGAACTCCAATTTGTATCCCTTCCCAAGAGTTCATTGATATTGGTCGCATTGCCTCCATTGAGAATAACCATAAACCGGTTGATTATGCGAAGAAAGGGCAGAAAGTAGCCATTAAGATTGTTGGCAGCAATTCTGAAGAACAGCAGAAAATGTTCGGGAGGCATTTTGAGATTGATGATGAACTTGTAAGCCATATTTCACGGAGATCTATTGATATTCTCAAAACTAATTATCGGGATGATCTGACTATGGAGGAATGGAAGCTGGTGGTTAAATTGAAGACTTTGTTCAAGATACAATAA 4026 0.4255 MGKKKPAIRDDENPPPQQGGGKSKKKAPVIDDDEYSIGVEVSEDAIPVAVEEKPVKKKGKKGNAKSKKDNDDDFDDAVVVDDDDVNEIVFAGKKKGKSKKSSGGSVFASGFGVLGDEEDVDNDDDEKSEVTGEGDDDEDEPVVSFTGKKKSSKGSKKGGGGSVFTAAAGFGLLGDDEDVDNDDGEEKSDEDEPVVFSGKKKPSKGWKKGASSLFSALDENDDGEEESKNEKVEDDDDEPITFSGKKKKSSKGSKKAGVSLSKAIPEEDSVSVSESAKGGDYEKDEDDVSFAFTGKKKSSKKKSGSAAAKVSDEIEFGSESVNVVEAEKPSVDNGNISKSEEVVGTSKNKKKNKKKSGRTKEEEDDLDKLLAELGEAPATAQPAAAPPQQDDKVQPVPVVGSAPGASGEKEGEDETVESAATKKKKKKKEKEKEKKAAAAAAGSAPVVEAVEEKAEAIEPKKNDSKTKAADKKVPKHVREMQELLARRKEAEEKKKKEEEEKQRKEEEERRRIEELERQAEEAKRRKKEKEKEKLLKKKQEGKLLTGKQKEEARRLEAMRRQILNSTGGVTLPGADTGGPSKKPIYQTKKGKSTNRNHNGAAAVKTEENVEATETTADLDTEELEKVEEVESVQMEDKVELPEVVEEVVDEDDDVEDEWDAKSWDDVNLNDRGAFADEEVDSEPEPIVKKEIKNGIPSKNAAGATNKPVTKPAAEETEDRKQAKVVVEDKKKKHDPQLSAVPSKPSEGNLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTKELKADATLKVPGLLVIDTPGHESFNNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIRKAMTQQSKDVQNEFNMRVTQIVTQFKEQGLNTELYYKNKEMGETFSIVPTSAISGEGIPDMLLLLVQWTQKTMTEKLTYSEEVQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVSGMQGPIVTTIRALLTPHPMKELRVKGSYIHHKEIKAAMGIKITAQGLEHAIAGASLYVVKPDDDLEYIKKAALEDVESVLSRIDRSGEGVCVQASTLGSLEALLEFLKTPEVNIPVSAINIGPVHKKDVMKASVMLEKKREYATILAFDVKVTPEARDLAEELGVKIFIADIIYHLFDQFKAYMDNIKEEKKKESADEAVFPCVLKILPNCVFNKKDPIVLGVDILEGILKIGTPICIPSQEFIDIGRIASIENNHKPVDYAKKGQKVAIKIVGSNSEEQQKMFGRHFEIDDELVSHISRRSIDILKTNYRDDLTMEEWKLVVKLKTLFKIQ* 1342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3659 1341 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 1074 1203 IPR036925 -
Mtr1g3659 1341 Gene3D Translation factors 1204 1341 - -
Mtr1g3659 1341 Gene3D - 744 971 IPR027417 -
Mtr1g3659 1341 Coils Coil 416 440 - -
Mtr1g3659 1341 MobiDBLite consensus disorder prediction 356 371 - -
Mtr1g3659 1341 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 1 1341 IPR015760 -
Mtr1g3659 1341 MobiDBLite consensus disorder prediction 1 622 - -
Mtr1g3659 1341 Pfam Elongation factor Tu GTP binding domain 753 961 IPR000795 GO:0003924|GO:0005525
Mtr1g3659 1341 MobiDBLite consensus disorder prediction 218 233 - -
Mtr1g3659 1341 PANTHER PHOTOSYSTEM II PROTEIN D1 1 1341 - -
Mtr1g3659 1341 MobiDBLite consensus disorder prediction 175 190 - -
Mtr1g3659 1341 MobiDBLite consensus disorder prediction 451 558 - -
Mtr1g3659 1341 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 749 965 IPR000795 GO:0003924|GO:0005525
Mtr1g3659 1341 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 750 1040 IPR027417 -
Mtr1g3659 1341 SUPERFAMILY Translation proteins 1208 1340 IPR009000 -
Mtr1g3659 1341 MobiDBLite consensus disorder prediction 711 737 - -
Mtr1g3659 1341 PRINTS GTP-binding elongation factor signature 753 766 IPR000795 GO:0003924|GO:0005525
Mtr1g3659 1341 PRINTS GTP-binding elongation factor signature 817 827 IPR000795 GO:0003924|GO:0005525
Mtr1g3659 1341 PRINTS GTP-binding elongation factor signature 833 844 IPR000795 GO:0003924|GO:0005525
Mtr1g3659 1341 PRINTS GTP-binding elongation factor signature 869 878 IPR000795 GO:0003924|GO:0005525
Mtr1g3659 1341 Gene3D - 1093 1197 IPR036925 -
Mtr1g3659 1341 MobiDBLite consensus disorder prediction 586 601 - -
Mtr1g3659 1341 Coils Coil 473 540 - -
Mtr1g3659 1341 MobiDBLite consensus disorder prediction 116 140 - -
Mtr1g3659 1341 MobiDBLite consensus disorder prediction 407 424 - -
Mtr1g3659 1341 Pfam Translation-initiation factor 2 1079 1190 IPR023115 -
Mtr1g3659 1341 Gene3D Translation factors 972 1092 - -
Mtr1g3659 1341 Pfam Elongation factor Tu domain 2 988 1066 IPR004161 GO:0005525
Mtr1g3659 1341 TIGRFAM small_GTP: small GTP-binding protein domain 754 878 IPR005225 GO:0005525
Mtr1g3659 1341 MobiDBLite consensus disorder prediction 277 294 - -
Mtr1g3659 1341 CDD IF2_eIF5B 752 962 - -
Mtr1g3659 1341 MobiDBLite consensus disorder prediction 46 74 - -
Mtr1g3659 1341 CDD aeIF5B_II 973 1079 - -
Mtr1g3659 1341 MobiDBLite consensus disorder prediction 692 746 - -
Mtr1g3659 1341 CDD IF2_aeIF5B_IV 1212 1307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3659 Mtr-Chr1 48267627 48275962 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3659 239 1341 Eukaryotic Initiation Factors Gene Family AT1G76810 67.665 0.0 1202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3659 K03243 - gmx:100814875 1548.49