Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3656 ATGGCTTTGGAAGAGAAACCCGAGACCGAGACTGTGGAATCAGCTGCGGCAAAAAAGAAAAGAAAGAAGAAGGAGAAGGAAAAGGAAAAGGAGAAGAAAGCAGCTGCTGCAGCCGCGGGAAGTACACCGGTAATTGAAACTGCCGAGACAAGTAAACCAACGGAAAATGATTCCAAGACCAAAGGAGTTGGGAAGAAAGTGACAAAGCTTGTTAGGGAGAGGCAAGAAGAACTGACTAAAAGAAAAGAGGCTGAAGAAAAAAGGAAAAAAGAAGAGGAAGAGAATCTAAGGAAAGAAGAAGAGGAGCAAAAAAGGTTAGAGGAGCTTGAGAGACTTGCGGAAGAAGCTAAACGTAGAAAGAAGGAAAAAGAAAAGGAAAAACTCCTGAAAAAGAAGCAGAGAGAACAAGCAGAGCGTTTTGATGCAATCAGGAGGCAGCTTTGTAATCCTGAAGCTGCTAAAAATCAAACTGTTTCGAAGCCTGTGGCTGAAGAAACTGAAGATAGAGAAGACGCCAAAGTTGTGGTTGAGGAGAAAAACGAAGAGCACGATACACAACAGGCTGCTGTGCCTTCTAGGCCGAGTGATAGTAACCTCCGGTCACCAATTTGCTGCATCATGGGTCATGTGGACGCTGGCAAAACCAAGCTTCTGGATTGTATTCGAGGTACAAATGTTCAAGAAGGTGAGGCTGGTGGTATCACTCAACAAATTGGTGCAACTTACTTTCCTGCCGAGAACATACGTGATAGAACTAAGGAACTGAAAGCTGATGCAACGCTGGAAGTTCCCGGTCTACTGGTTATTGATACCCCAGGCCACGAATCATTCAATAACTTAAGGTCTCGGGGTTCAGGTCTATGTGATATTGCAATTTTGGTTGTTGACATTATGCATGGCTTAGAGCCACAAACTATAGAGTCACTCAATCTATTAAAAATGAGGAACACAGAGTTCATTGTTGCATTAAATAAGGTTGACAGGCTTTATGGCTGGAAAACATGTCGCAATGCTCCAATTCGTAAAGCAATGAAGCAGCAGTCTGAAGATGTCAAAAACATGTTTAAAACAAGGGTCAATGAGATTGTTACTCAGTTCAAGGAACAAGGGCTAAATACTGAGTTGTATTATAAAAATAAAGAAATGGGAGAAACATTCAGCATTGTGCCTACAAGTGCAATAAGTGGTGAAGGAATCCCGGATATGTTATTACTATTAGTTAAGTGGACCCAAAAGACCATGACCAAGAAGCTTACATACAGCGAAGAAGTGCAGTGTACCGTTTTGGAAGTCAAGGTTATCGAAGGCCATGGAACTACTATTGATGTTGTTTTAGTTAATGGTGTTCTTCATGAAGGGGATCAAATAGTTGTATCTGGAATGCAGGGTCCAATTGTTACCACAATTCGAGCTTTATTGACACCTCATCCAATGAAGGAACTTCGTGTTAAGGGATCATATATCCATCACAAAGAAATCAAAGCTGCTATGGGTATCAAGATCACTGCCCAGGGACTTGAACACGCTGTTGCTGGCGCTAGTTTACATGTGGTGAAGCCTAATGATGATTTGAAATATATTAAAAAAGCAGCCTTGGAAGACGTGGAGTCAGTCTTGAGCAGGATTGACAGGAGTGGTGAGGGCGTTTGTGTCCAGGCATCTACCCTCGGCTCATTGGAATCATTGCTAGAGTTTTTGAAAACTCCAGAAGTGAATATTCCTGTTGGTGCTATAAACATAGGCCCTGTACATAAGAAGGATGTGATGAAGGCCAGTGTAATGCTTGAAAAGAAACGAGAATATTCTACTATATTGGCGTTTGATGTCAAAGTCACCTCTGAAGCTAAGGAACTTGCAGATAAATTGGGTGTGAAAATTTTTATTGCCGATATTATTTATCATCTATTTGATCAATTTAAGGTTTACATGGCCAACATTAAGGAGGAGAAAAAGAAAGAATCTGCTGATGAGGCAGTCTTTCCATGCGTTCTGAAGATCATACCAAATTGTGTCTTCAACAAGAAGGATCCGATTATTTTGGGAGTTGATATCCTTAAAGGCATTTTAAAGATTGGAACTCCAATTTGTATCCCTACCCAAAATTTCATTGATATTGGTCGCATCAACTCCATTAAGATTAACGATAAACTGGTTGATCGTGCGACAAAAGGGCAGCAAGTAGCCATTAAGATTGTAGGCAGAAATTCTGAGGAACAGCAGAAAATGTTTGGGAGACATTTTGGGATTAATGATGAACTTGTAAGCCATATTTCACGGAGATCTATTGATGTTCTAAAAAATTATTATCAAGATGATCTATCTATGGAGGAACGTAAGCTGCTGGTGAACTTGAAGAGGATTTTCAAGATACAATGA 2376 0.4061 MALEEKPETETVESAAAKKKRKKKEKEKEKEKKAAAAAAGSTPVIETAETSKPTENDSKTKGVGKKVTKLVRERQEELTKRKEAEEKRKKEEEENLRKEEEEQKRLEELERLAEEAKRRKKEKEKEKLLKKKQREQAERFDAIRRQLCNPEAAKNQTVSKPVAEETEDREDAKVVVEEKNEEHDTQQAAVPSRPSDSNLRSPICCIMGHVDAGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRDRTKELKADATLEVPGLLVIDTPGHESFNNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIRKAMKQQSEDVKNMFKTRVNEIVTQFKEQGLNTELYYKNKEMGETFSIVPTSAISGEGIPDMLLLLVKWTQKTMTKKLTYSEEVQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVSGMQGPIVTTIRALLTPHPMKELRVKGSYIHHKEIKAAMGIKITAQGLEHAVAGASLHVVKPNDDLKYIKKAALEDVESVLSRIDRSGEGVCVQASTLGSLESLLEFLKTPEVNIPVGAINIGPVHKKDVMKASVMLEKKREYSTILAFDVKVTSEAKELADKLGVKIFIADIIYHLFDQFKVYMANIKEEKKKESADEAVFPCVLKIIPNCVFNKKDPIILGVDILKGILKIGTPICIPTQNFIDIGRINSIKINDKLVDRATKGQQVAIKIVGRNSEEQQKMFGRHFGINDELVSHISRRSIDVLKNYYQDDLSMEERKLLVNLKRIFKIQ* 792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3656 791 MobiDBLite consensus disorder prediction 1 136 - -
Mtr1g3656 791 Coils Coil 162 182 - -
Mtr1g3656 791 Gene3D Translation factors 654 791 - -
Mtr1g3656 791 PANTHER PHOTOSYSTEM II PROTEIN D1 148 791 - -
Mtr1g3656 791 PANTHER PHOTOSYSTEM II PROTEIN D1 10 147 - -
Mtr1g3656 791 Pfam Elongation factor Tu GTP binding domain 203 410 IPR000795 GO:0003924|GO:0005525
Mtr1g3656 791 PRINTS GTP-binding elongation factor signature 203 216 IPR000795 GO:0003924|GO:0005525
Mtr1g3656 791 PRINTS GTP-binding elongation factor signature 267 277 IPR000795 GO:0003924|GO:0005525
Mtr1g3656 791 PRINTS GTP-binding elongation factor signature 283 294 IPR000795 GO:0003924|GO:0005525
Mtr1g3656 791 PRINTS GTP-binding elongation factor signature 319 328 IPR000795 GO:0003924|GO:0005525
Mtr1g3656 791 MobiDBLite consensus disorder prediction 161 186 - -
Mtr1g3656 791 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 199 490 IPR027417 -
Mtr1g3656 791 MobiDBLite consensus disorder prediction 52 136 - -
Mtr1g3656 791 Gene3D - 194 421 IPR027417 -
Mtr1g3656 791 Coils Coil 9 39 - -
Mtr1g3656 791 TIGRFAM small_GTP: small GTP-binding protein domain 204 328 IPR005225 GO:0005525
Mtr1g3656 791 Gene3D - 541 647 IPR036925 -
Mtr1g3656 791 MobiDBLite consensus disorder prediction 1 20 - -
Mtr1g3656 791 Pfam Elongation factor Tu domain 2 438 515 IPR004161 GO:0005525
Mtr1g3656 791 Coils Coil 67 138 - -
Mtr1g3656 791 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 199 415 IPR000795 GO:0003924|GO:0005525
Mtr1g3656 791 Pfam Translation-initiation factor 2 530 640 IPR023115 -
Mtr1g3656 791 CDD aeIF5B_II 423 529 - -
Mtr1g3656 791 SUPERFAMILY Translation proteins 658 790 IPR009000 -
Mtr1g3656 791 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 525 653 IPR036925 -
Mtr1g3656 791 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 10 147 IPR015760 -
Mtr1g3656 791 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 148 791 IPR015760 -
Mtr1g3656 791 CDD IF2_aeIF5B_IV 662 757 - -
Mtr1g3656 791 CDD IF2_eIF5B 202 412 - -
Mtr1g3656 791 Gene3D Translation factors 422 540 - -
Mtr1g3656 791 MobiDBLite consensus disorder prediction 151 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3656 Mtr-Chr1 48248321 48252911 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3656 194 791 Eukaryotic Initiation Factors Gene Family AT1G76810 80.597 0.0 1012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3656 K03243 - gmx:100814640 1038.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3656 1 48248321 48252911 Mtr1g3656 1 48248321 48252911 ECH