Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3652 ATGCTAGGTGACTCGGCTGTTTTGAGTGGTGGCGGTGGAGATGCACCAGCACCAGCAGCTGCACCACCTAACATGACGGTGGAAGGTGGTGGTGGAGTTGGATCAAATTCAGAGAGTGATGTTGAAAGAGGAAGAGTTGAAGATGGTGAACGTAGCTTCGGCGGTAACAGGTGGCCGCGACAAGAAACTTTGGCGCTTTTAAGGATACGATCGGATATGGATACAGTGTTTCGAGATGCAAGTGTTAAAGGTCCTTTGTGGGATGAAGTTTCAAGGAAGCTAGCAGAACTTGGGTACCACAGAAGTTCAAAGAAATGCAAAGAGAAGTTTGAGAATGTTTATAAGTATCACAAGAGAACCAAAGATGGTCGAGGTGGAAAATCAGATGGTAAGACTTATCGATTTTTTGATCAATTAGAAGCCCTTGATCATTTTCATACCAACCCTTCACCTCAAAACATATCAAAACCACCACAAATTTCGGCACCAACACCGTCACAAGTTGTTACAACTGCAACAGTTTCACTACCAATAACAGAATCAACAATGTCACAAGTGGTTAACACCACTCTAAGTATCCCTCATGCAACTGTTCCATCAATTTCCATGCCTCAAAACAATATTGCAACTACCCAACCAATTATGAATATGAATCCTACAATCCCATCCAATCCTTCAACTATTTTCCAACCATCAACAACAAACCCTACTTCCACCAACCCTCTTCCATCTTTTCCTAACATTTCTACAGATCTATTATCCAATTCCATGGCTAGCTCCTACTCGACATCTTCCGAAGACACAACGGAAGAAGGATCTCGAAAGAGGAAGCGAAAATGGAAGAACTTTTTTGAGAGAATAATGAAGAAAGTGACCGAGAAGCAAGAGGATTTGCAGAAGAGATTCTTGGAGGTTATTGAGAAACGCGAGCAAGAACGAGTTGTTAGAGAAGAAGCGTGGAGAGCACAAGAGATGCAAAGAATCAATAGAGAGAGGGAAATGCTTGCACACGAAAGATCTATAACTGCAGCAAAAGATGCTGCAGTCATGTCTTTCTTGCAAAAAATAGCCGAACAACAAAATCTAGGACAAGCATTACATAACATCAACATTGCACAACCACCGCCACCACAACAACAACTACCACAAAGAAGTGTAGCACCAACACCAACACCGGCGGTAGTACCAATATCTGTGGTACAAGTTAACACAACGCCGCCGCCAGCACAACCACCTCCGGTTAGCAAGTTAGGCACAACAATAGTCCAGCAGCAACAACAACAACAATTGGTGACGAATATGGAAATTGTGAAAGTTGATAACAATGGCGAGACTTTCATGGGAGGGATGAGTTCGTCAAGGTGGCCGAAAGTTGAAGTTCAAGCACTTATAAATCTGAGGACGAGCATGGACAATAAGTACCAAGAGAATGGACCAAAAGGTCCTCTATGGGAGGAGATATCTTTAGCAATGAAGAACCTCGGTTACAATAGGAATGCAAAAAGGTGCAAAGAAAAATGGGAGAATATAAACAAGTACTTCAAGAAAGTGAAAGAGAGTAACAAAAAGAGACCCGAAGATTCAAAGACATGTCCTTATTTTCATCAGTTGGATGCTTTGTATAAGGAGAAAGGAAAGGGGGAAAATTATAGTGGCGGTGGCGGTGGCGGTGCTGGTTCGACCCAGGTGGTGCAACCGGAGAACATGGCGGCACCGTTGATGGTTCAGCCGGAGCAGCAATGGCGGCCACCTCAGCAGGGAGAAGATAACATGGAGCAGAACCGTGGACAGGAAGAAGAAGATATGGATGAAGATGATAAAGATGGTGAGGAAGAAGATGATGAAGAAGATATGGATGAAAGTGGTAACTTTGAAGTAGTGGCAAACAAGCCTGCAGTGGGTGCATCAGCTTGA 1914 0.4357 MLGDSAVLSGGGGDAPAPAAAPPNMTVEGGGGVGSNSESDVERGRVEDGERSFGGNRWPRQETLALLRIRSDMDTVFRDASVKGPLWDEVSRKLAELGYHRSSKKCKEKFENVYKYHKRTKDGRGGKSDGKTYRFFDQLEALDHFHTNPSPQNISKPPQISAPTPSQVVTTATVSLPITESTMSQVVNTTLSIPHATVPSISMPQNNIATTQPIMNMNPTIPSNPSTIFQPSTTNPTSTNPLPSFPNISTDLLSNSMASSYSTSSEDTTEEGSRKRKRKWKNFFERIMKKVTEKQEDLQKRFLEVIEKREQERVVREEAWRAQEMQRINREREMLAHERSITAAKDAAVMSFLQKIAEQQNLGQALHNINIAQPPPPQQQLPQRSVAPTPTPAVVPISVVQVNTTPPPAQPPPVSKLGTTIVQQQQQQQLVTNMEIVKVDNNGETFMGGMSSSRWPKVEVQALINLRTSMDNKYQENGPKGPLWEEISLAMKNLGYNRNAKRCKEKWENINKYFKKVKESNKKRPEDSKTCPYFHQLDALYKEKGKGENYSGGGGGGAGSTQVVQPENMAAPLMVQPEQQWRPPQQGEDNMEQNRGQEEEDMDEDDKDGEEEDDEEDMDESGNFEVVANKPAVGASA* 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3652 637 CDD GT1 56 121 - -
Mtr1g3652 637 MobiDBLite consensus disorder prediction 1 57 - -
Mtr1g3652 637 MobiDBLite consensus disorder prediction 545 637 - -
Mtr1g3652 637 PANTHER - 30 630 - -
Mtr1g3652 637 MobiDBLite consensus disorder prediction 257 277 - -
Mtr1g3652 637 ProSiteProfiles Myb-like domain profile. 56 114 IPR001005 -
Mtr1g3652 637 MobiDBLite consensus disorder prediction 40 55 - -
Mtr1g3652 637 Pfam Myb/SANT-like DNA-binding domain 453 540 IPR044822 -
Mtr1g3652 637 Pfam Myb/SANT-like DNA-binding domain 56 142 IPR044822 -
Mtr1g3652 637 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 30 630 - -
Mtr1g3652 637 Coils Coil 281 301 - -
Mtr1g3652 637 CDD GT1 453 518 - -
Mtr1g3652 637 SMART sant 451 513 IPR001005 -
Mtr1g3652 637 SMART sant 54 116 IPR001005 -
Mtr1g3652 637 MobiDBLite consensus disorder prediction 222 244 - -
Mtr1g3652 637 MobiDBLite consensus disorder prediction 145 166 - -
Mtr1g3652 637 MobiDBLite consensus disorder prediction 594 622 - -
Mtr1g3652 637 ProSiteProfiles Myb-like domain profile. 447 511 IPR001005 -
Mtr1g3652 637 Gene3D - 58 119 - -
Mtr1g3652 637 Gene3D - 455 516 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3652 Mtr-Chr1 48196771 48200272 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3652 54 592 Trihelix Transcription Factor Family AT1G76890 45.455 1.31e-142 425
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Mtr1g3652 Myb_DNA-bind_4 7.3e-22 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3652 - - gmx:100811604 622.854
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3652 1 48196771 48200272 Mtr1g3652 1 48196771 48200272 ECH
Mtr6g0982 6 13125509 13129078 Mtr1g3652 1 48196771 48200272 PCT