Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3642 ATGGCTTCTTCCAAGCTCATGCCTTCTTCCGATCCACCTTCTTCTCCATCTTCCAAACCTCACTTCACCACCGCCAATTTCCTCGACGATCAAATCTCCCTCGCTGACGCCGTCGCCACTCCCCGAACCGTCGACGATGTCTGGCGAGAGATTGTCGCCGGTGATGCGATCTCCGGCGATAGGGAGTGTAAAGAAGAGATTTCCGATGAGATGATGACGCTGGAGGATTTTCTTGTGAAAGCTGGTGCCGTTGAGGATGAGGAGGAGGGTGAGGATGTTAAGATGACGATTCCGTTATCGGAGACGCTTAGTGGTAGTGGTATGTTTTCCTTGGATTCCAGTTTTCAGGGAATTGAAAACGTTGATGGGTCGGTGATAGGGTTTGGGAATGGGAATGTGAATGTGAATGGGGTGGAAATGGTTGAAGGTGGAGGAAGGGGGAAGAGAGGACGGCCTGTTATGGAGCAGTTGGATAAAGCTGCTCAGCAGAGGCAGAGGAGAATGATTAAGAATAGAGAATCTGCTGCTAGGTCTAGGGAACGCAAGCAGGCTTATCAAGTGGAATTGGAGTCATTGGCGGTGAAGCTAGAGGAGGAAAATGACAAGTTGATGAAGGAAAAGGCTGAGAGGAAAAAGGAGAGGTTCAAGCAGCTTATGGAAAAAGTGATTCCTGTTGTGGAGCAGCGACGGCCGCCACGGTTACTCCGTAGGGTTCGCTCCTTGCAGTGGTAG 732 0.5055 MASSKLMPSSDPPSSPSSKPHFTTANFLDDQISLADAVATPRTVDDVWREIVAGDAISGDRECKEEISDEMMTLEDFLVKAGAVEDEEEGEDVKMTIPLSETLSGSGMFSLDSSFQGIENVDGSVIGFGNGNVNVNGVEMVEGGGRGKRGRPVMEQLDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVKLEEENDKLMKEKAERKKERFKQLMEKVIPVVEQRRPPRLLRRVRSLQW* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3642 243 Coils Coil 182 216 - -
Mtr1g3642 243 CDD bZIP_plant_BZIP46 163 209 - -
Mtr1g3642 243 PANTHER BASIC LEUCINE ZIPPER TRANSCRIPTION FACTOR 21 242 - -
Mtr1g3642 243 PRINTS cAMP response element binding (CREB) protein signature 94 109 - -
Mtr1g3642 243 PRINTS cAMP response element binding (CREB) protein signature 158 174 - -
Mtr1g3642 243 PRINTS cAMP response element binding (CREB) protein signature 176 196 - -
Mtr1g3642 243 PRINTS cAMP response element binding (CREB) protein signature 196 213 - -
Mtr1g3642 243 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 21 242 IPR043452 GO:0003700|GO:0045893
Mtr1g3642 243 SUPERFAMILY Leucine zipper domain 163 214 IPR046347 GO:0003700|GO:0006355
Mtr1g3642 243 SMART brlzneu 159 221 IPR004827 GO:0003700|GO:0006355
Mtr1g3642 243 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 166 181 IPR004827 GO:0003700|GO:0006355
Mtr1g3642 243 Gene3D - 161 212 - -
Mtr1g3642 243 MobiDBLite consensus disorder prediction 1 23 - -
Mtr1g3642 243 Pfam bZIP transcription factor 161 217 IPR004827 GO:0003700|GO:0006355
Mtr1g3642 243 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 161 213 IPR004827 GO:0003700|GO:0006355
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3642 9 243 bZIP Transcription Factor Family AT5G44080 47.970 4.56e-68 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Mtr1g3642 bZIP_1 3.1e-12 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3642 K14432 - gmx:100808917 221.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3642 1 48041850 48046958 Mtr1g3642 1 48041850 48046958 ECH