Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3635 ATGTCTTGTCCTATGGTTTCAGCGCCGACTCAGCATGGATTGGGCCAGGCCCAAAATGAGTGGGTCCAAGTCCAACAAGGAAGTGGCTATTTTCCAATGATGTCAGGTTTTGTCCCTGTCTCTTCTAGTTCTAATTCTCCTCGTATGTATTCTTCTAGTGCTGCTCTTTTGGGGTCTAGTTCATGGGTTGGACATAAAAGAGTGCGTGAAGATGGTCTTCTTAAGAGTGATGATTCTGTTGGTGGTTCTTCTCAACAAGATATGAGAAATATTGCTGATTTTAGATTACCTTCTTCACAGGGAAACTCATCATCAGTAGCAGAAGCAACAACTTCAAGTACAAGCAATACAACACAATCAAGTGAAGCAGCATCGACAACAAACGAAGAAGAAACCGGGGAGAGAAGAAGAAGATACAGAGGAGTAAGACAGAGACCATGGGGAAAATGGGCAGCAGAAATTCGAGATCCACACAAAGCAGCAAGAGTATGGCTTGGAACATTTGAAACTGCAGAAGCTGCAGCAAGAGCTTACGATGAAGCTGCATTAAGATTCAGAGGAAACAGAGCGAAACTCAACTTCCCTGAAAATGTTCCAGCAAGTGCAACAAGACCAACTTTTCCGGTGAATACTTCAACATCTTCTGTTTCTCCGGCAACCCATTATTCCCCTGCACCACCGCAAATACAGCCACAACAACAACAATTTCCTCAGTTTCAAACCTCTTCTGATATGTTGAGAGACTATTATCAATATTCTCAGCTTCTGAAAGGTTCTGGTGATTTTCAAGGACTTGAACAATGGTTCTATGAATCACAAATGGCGGCAATACATTCATCTTCTTCCATGTTATCGCCTTCTCCGTCACTTTCTTTGTCATCTTCTTCATCTCCAACTGCATTTTCACCTTCCAGTCAATTATCCTCTGTTTCACTTCCTCTGTTTCCTGGTCAGCAAATGGAGTTTTTCCGGCCACCGGAAGATAACTCTCGCGGCGGAGGATATACTGGTGGGTCCCATTTTCCACCTTCAACATGGTCAGATACTGGTGGTTATCATCCTCCTCCTCCACCACCTTCTTCTAGTTGA 1089 0.4362 MSCPMVSAPTQHGLGQAQNEWVQVQQGSGYFPMMSGFVPVSSSSNSPRMYSSSAALLGSSSWVGHKRVREDGLLKSDDSVGGSSQQDMRNIADFRLPSSQGNSSSVAEATTSSTSNTTQSSEAASTTNEEETGERRRRYRGVRQRPWGKWAAEIRDPHKAARVWLGTFETAEAAARAYDEAALRFRGNRAKLNFPENVPASATRPTFPVNTSTSSVSPATHYSPAPPQIQPQQQQFPQFQTSSDMLRDYYQYSQLLKGSGDFQGLEQWFYESQMAAIHSSSSMLSPSPSLSLSSSSSPTAFSPSSQLSSVSLPLFPGQQMEFFRPPEDNSRGGGYTGGSHFPPSTWSDTGGYHPPPPPPSSS* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3635 362 Pfam AP2 domain 138 187 IPR001471 GO:0003700|GO:0006355
Mtr1g3635 362 CDD AP2 146 197 IPR001471 GO:0003700|GO:0006355
Mtr1g3635 362 PANTHER DNA-BINDING DOMAIN 3 323 IPR044808 GO:0003700|GO:0009873
Mtr1g3635 362 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110 3 323 - -
Mtr1g3635 362 SMART rav1_2 138 201 IPR001471 GO:0003700|GO:0006355
Mtr1g3635 362 ProSiteProfiles AP2/ERF domain profile. 138 195 IPR001471 GO:0003700|GO:0006355
Mtr1g3635 362 MobiDBLite consensus disorder prediction 281 362 - -
Mtr1g3635 362 SUPERFAMILY DNA-binding domain 138 196 IPR016177 GO:0003677
Mtr1g3635 362 Gene3D AP2/ERF domain 137 197 IPR036955 GO:0003700|GO:0006355
Mtr1g3635 362 MobiDBLite consensus disorder prediction 95 144 - -
Mtr1g3635 362 PRINTS Ethylene responsive element binding protein signature 139 150 IPR001471 GO:0003700|GO:0006355
Mtr1g3635 362 PRINTS Ethylene responsive element binding protein signature 161 177 IPR001471 GO:0003700|GO:0006355
Mtr1g3635 362 MobiDBLite consensus disorder prediction 281 315 - -
Mtr1g3635 362 MobiDBLite consensus disorder prediction 203 233 - -
Mtr1g3635 362 MobiDBLite consensus disorder prediction 95 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3635 Mtr-Chr1 47974650 47977484 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3635 84 246 AP2-EREBP Transcription Factor Family AT5G61890 45.882 1.04e-36 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mtr1g3635 AP2 4.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3635 - - lja:Lj5g3v1937400.1 289.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3635 1 47974650 47977484 Mtr1g3635 1 47974650 47977484 ECH
Mtr6g1019 6 13842075 13844969 Mtr1g3635 1 47974650 47977484 PCT