Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3630 ATGGATCCTCATGCTGCTGAAGATTTGCCTCAATACATTCATATCAATCAAAATGATTTTTTTATGCGAAGGCATAAGAAGCAGAAGGAGGAGGATATTGCTATATGTGAATGCAGGTATGATGAAGATGATCCTGACAGTGCCTGTGGAGATGGGTGTCTAAATGTATTAACCAGCACTGAATGCACCCCTGGATTTTGCCCTTGTGACATCCATTGTAAAAATCAGAAATTTCAGAAGTGTGAATATGCAAAAACAAAGTTGTTTAAAACTGAAGGCCGAGGGTGGGGTCTTTTGGCTGATGAGGAAATTAAGGCAGGACAGTTTGTCATTGAATACTGTGGAGAAGTAATATCATGCAAAGAAGCCAAGCGCAGATCCCATACTTATGAAATTCAAGGTCTTAAGGATGCATTTATCATTTCTCTTAATGCGTCTGAATCTATCGATGCAACTAGAAAAGGAAGCCTTGCAAGATTTATAAACCATTCCTGTCAACCAAACTGTGAGACAAGAAAATGGAATGTCATGGGGGAAATAAGAGTTGGAATATTTGCACTGGAAAATATTCCTATTGGAACTGAACTGGCATATGACTATAATTTTGAATGGTTTGGAGGTGCAAAGGTTCGCTGCCTCTGTGGTGCGCTCAAATGTTCTGAATTCCTTGGTGCAAAATCTCGTGGTTTTCAAGAGGATACTTATCTATGGGAAGATGATGATGACAGATACTCAATTGAGAAAATTCCTTTATATGACTCTGCGGAGGATGAACTCACGTCAAATGTTGGTGGACAGAGTGAACAATCCATGGCTATTATACTGAAAGTTGAAGAACCATCGGAGTCCACTGTTTTAAATATTCAACCACTGAATTCAATTGGGATCAATGGATTAGGTATTCAGAAAATGAAAACTGAAATAGAAAGCGAGGACATGAGGTTGTACTCCCAAGATACCAAACAGGATCTTCCCCAAAAAAATGCAATGATATCGCGCATTCGAAGTAACACTGCAGGAGGAAAGTCCATCTCTACCAAAAGATCAAAGGGGGCAAAGCTTAAAAATCGCATACAGAAGAAAATTGATGCAAAGTATGCAGCTGGCCTTTTAGCATCAAAGGAAGCACAGGAGGAGATTTTAGATTATGAGAAAAGAAAAGATGACGCTAGGGAAGCCCTTGATTCTTTATACAATGAAATACGGCCTGCCATTGAAGAACACGAGAAGGATACCCAAGATAGTGTATCTACGACAGTAGCAGAGAAGTGGATACAGGCTTCCTGCCTAAAACTCAAGGCGGAGTTTGATCTTTACTCGTCAATTATTAAAAATGTTGCTTGTACTCCTCAAAGGGCACCCAGCCAAGCAAAAGGTACTGAAGTCGATAACGAAGACAAAATGAAGCTTTTGACGTTCTCACCCTCATCTAATCCATAA 1440 0.3979 MDPHAAEDLPQYIHINQNDFFMRRHKKQKEEDIAICECRYDEDDPDSACGDGCLNVLTSTECTPGFCPCDIHCKNQKFQKCEYAKTKLFKTEGRGWGLLADEEIKAGQFVIEYCGEVISCKEAKRRSHTYEIQGLKDAFIISLNASESIDATRKGSLARFINHSCQPNCETRKWNVMGEIRVGIFALENIPIGTELAYDYNFEWFGGAKVRCLCGALKCSEFLGAKSRGFQEDTYLWEDDDDRYSIEKIPLYDSAEDELTSNVGGQSEQSMAIILKVEEPSESTVLNIQPLNSIGINGLGIQKMKTEIESEDMRLYSQDTKQDLPQKNAMISRIRSNTAGGKSISTKRSKGAKLKNRIQKKIDAKYAAGLLASKEAQEEILDYEKRKDDAREALDSLYNEIRPAIEEHEKDTQDSVSTTVAEKWIQASCLKLKAEFDLYSSIIKNVACTPQRAPSQAKGTEVDNEDKMKLLTFSPSSNP* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3630 479 ProSiteProfiles AWS domain profile. 31 82 IPR006560 GO:0005634|GO:0018024
Mtr1g3630 479 SMART set_7 84 207 IPR001214 GO:0005515
Mtr1g3630 479 Pfam SET domain 95 201 IPR001214 GO:0005515
Mtr1g3630 479 ProSiteProfiles SET domain profile. 84 201 IPR001214 GO:0005515
Mtr1g3630 479 Coils Coil 373 400 - -
Mtr1g3630 479 SUPERFAMILY SET domain 11 219 IPR046341 -
Mtr1g3630 479 Pfam AWS domain 43 81 IPR006560 GO:0005634|GO:0018024
Mtr1g3630 479 ProSiteProfiles Post-SET domain profile. 208 224 IPR003616 -
Mtr1g3630 479 SMART shorttest3 31 83 IPR006560 GO:0005634|GO:0018024
Mtr1g3630 479 PANTHER SET DOMAIN PROTEINS 3 411 - -
Mtr1g3630 479 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 3 411 - -
Mtr1g3630 479 Gene3D SET domain 2 236 IPR046341 -
Mtr1g3630 479 MobiDBLite consensus disorder prediction 451 479 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3630 Mtr-Chr1 47924134 47930333 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3630 66 200 C2H2 Transcription Factor Family AT2G23740 36.601 8.51e-20 91.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Mtr1g3630 SET 1.4e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3630 - - gmx:100804657 752.281
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3630 1 47924134 47930333 Mtr1g3630 1 47924134 47930333 ECH