Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3629 ATGGATCACGCTGCCCTAGCCGTCCTCGCCGCCATCGCCAGTTTTTTCGTCGTCACAGTCATACTCGCCGCCATCATCCTCATCTGCCAACACCGCAAAACCACCCAAACCCGCCGTAACAACCAGATCCGAACCCGACCACTTCGTAACCCAAATCATTACCCAACCAGCTCCTCCTCCCTCCCCGTCGATGCCAGCTGGTCATGGGATCCAAATCTCAAAATCTCCATGGAAGAACTCTCACGCGCTACAAAAAATTTCTCCAACACCCTCATCGTCGGCGATGGTAGCTTCGGCTATGTTTACAAAGCTAGTCTCTCCACCGGCGCTACCGTCGCCGTCAAAAAACTCTCCCCTGACGCTTTTCAAGGCTTCCGTGAATTCGCAGCGGAGATGGAAACGCTAAGCAAACTCCGCCACCACAACATCGTGAAAATCCTCGGTTATTGGGCTTCTGGAGCTGAACGGTTACTCGTTTACGAGTTCATTGAAAAAGGAAACCTCGATCAATGGCTTCATGAATCATCTCCAACCTCTTCTTCCACTCACCAAAACGATGAGGTTTCTATTTCAATCGATTTTATTCGTTCTCCTTTGCCATGGGAAACACGTGTCAAAATCATACGTGGTGTTGCTCATGGGCTTTGTTATTTACATGGGCTTGAAAAGCCCATTATTCATCGAGATATCAAGGCCAGTAATGTTTTGTTGGACTCTGAGTTTGAGGCCCATATAGCTGATTTCGGACTCGCACGTAGGATGGATAAATCACATTCGCATGTGTCAACGCAGGTGGCGGGTACTATAGGTTACATGCCACCTGAGTATCGAGATGGGTCTAATGTAGCAAACCCGAAAGTGGATGTGTATAGTTTCGGAGTGTTGATGATTGAAACCGTGTCGGGCCATAGGCCCAATTTGGCTGTGAAATTGGAAGGAAATGATATTGGGCTTGTTAATTGGGCCAGGAAGATGAAGGAAAGGAACACTGAACTAGAGATGTTGGATGGAAATATTCCAAGAGAAGAAGGGTTGAAGGAGGAGAGTGTTAGGGAGTATGTACGTATTGCTTGCATGTGTACTGGTGAGTTACAGAAAGATAGACCTGAAATGCCAGAGGTTGTCAAATTATTAGACTCAATGCCCTTGTGA 1152 0.4731 MDHAALAVLAAIASFFVVTVILAAIILICQHRKTTQTRRNNQIRTRPLRNPNHYPTSSSSLPVDASWSWDPNLKISMEELSRATKNFSNTLIVGDGSFGYVYKASLSTGATVAVKKLSPDAFQGFREFAAEMETLSKLRHHNIVKILGYWASGAERLLVYEFIEKGNLDQWLHESSPTSSSTHQNDEVSISIDFIRSPLPWETRVKIIRGVAHGLCYLHGLEKPIIHRDIKASNVLLDSEFEAHIADFGLARRMDKSHSHVSTQVAGTIGYMPPEYRDGSNVANPKVDVYSFGVLMIETVSGHRPNLAVKLEGNDIGLVNWARKMKERNTELEMLDGNIPREEGLKEESVREYVRIACMCTGELQKDRPEMPEVVKLLDSMPL* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3629 383 SMART serkin_6 87 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g3629 383 PANTHER RECEPTOR SERINE-THREONINE PROTEIN KINASE 1 380 - -
Mtr1g3629 383 SUPERFAMILY Protein kinase-like (PK-like) 53 377 IPR011009 -
Mtr1g3629 383 MobiDBLite consensus disorder prediction 36 60 - -
Mtr1g3629 383 ProSiteProfiles Protein kinase domain profile. 87 383 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g3629 383 ProSitePatterns Serine/Threonine protein kinases active-site signature. 225 237 IPR008271 GO:0004672|GO:0006468
Mtr1g3629 383 Gene3D Transferase(Phosphotransferase) domain 1 163 382 - -
Mtr1g3629 383 Pfam Protein tyrosine and serine/threonine kinase 93 377 IPR001245 GO:0004672|GO:0006468
Mtr1g3629 383 Gene3D Phosphorylase Kinase; domain 1 55 162 - -
Mtr1g3629 383 ProSitePatterns Protein kinases ATP-binding region signature. 93 116 IPR017441 GO:0005524
Mtr1g3629 383 PANTHER OS01G0253100 PROTEIN 1 380 IPR045271 GO:0004714|GO:0006468
Mtr1g3629 383 CDD STKc_IRAK 93 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3629 Mtr-Chr1 47922282 47923760 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3629 32 378 Receptor kinase-like Gene Family AT5G07280 40.625 2.50e-69 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Mtr1g3629 PK_Tyr_Ser-Thr 1.2e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3629 - - lang:109335579 523.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3629 1 47922282 47923760 Mtr1g3629 1 47922282 47923760 ECH