Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3596 ATGGAAAATATTAGTGTTACCTCTTTGTTCTTTTGCTTACTCTTTTTTAGCATAACAAAGATACAAGTAATAACTTCTCTTTCACCTGATGGACAAGCACTTCTTTCTCTTGCAACATCATCACCTTCTATTCTCTCTTCATGGAACCCTTCAACATCAACACCATGTTCATGGAAAGGCATAACTTGTTCACCACAATCTAGAGTGATTTCCCTTTCTATCCCTGATACTTTCCTCAACCTCACTTCTTTACCATCTCAACTATCCTCTTTAACAATGCTTCAGCTTCTTAATCTCTCTTCAACCAATCTCTCTGGCTCTATCCCACCTTCTTTTGGTCAACTCTCCCATCTTCAACTCCTTGACCTCTCCTCAAACTCTCTCACTGGTTCCATTCCTAATGAACTTGGAAGCCTCTCTTCTCTTCAATTCCTTTTCTTAAACTCAAACAGATTAACAGGAACCATTCCAAAACAATTTTCAAATCTCACTTCACTTGAAGTTCTTTGTCTTCAAGACAATCTTCTCAATGGCTCAATTCCTTCACAACTAGGCTCTTTGAAATCTCTTCAACAGTTTAGGATAGGTGGTAACCCTTTTCTCACTGGAGAACTTCCTTCACAGTTAGGACTATTAACCAACCTCACCACATTTGGTGCAGCTGCAACTTCACTTTCAGGTTCCATTCCCTCTTCATTTGGAAACTTGATCAATCTACAAACTCTAGCACTTTATGATACAGAAATATCTGGTTCAATACCACCTGAACTTGGTTTGTGTTCTGAGTTGAGGAATCTTTATTTACATATGAACAACCTCACTGGCTCTATTCCTTTTCAATTAGGTAAGTTGCAAAAACTTACTAGTTTGCTTCTTTGGGGGAATACATTATCTGGTAAAATCCCTTCTGAAATTTCAAACTGTTCATCATTAGTTATATTTGATGTATCATCTAACGATCTCACTGGTGAAATACCTGGTGATTTTGGGAAGCTAGTTGTTCTTGAACAGCTTCATTTATCAGATAATTCGCTCACCGGTCAAATACCGTGGCAGTTGAGTAACTGCACAAGCCTTGCAACTGTCCAGCTTGACAAGAATCAGTTATCAGGTACAATTCCTTATCAGCTTGGAAAGTTGAAGGTTCTACAGAGTTTTTTCTTGTGGGGGAATTTGGTTTCTGGTACTATACCGCCCTCTTTTGGAAACTGTTCAGAACTGTATGCACTTGATCTTTCAAGGAATAAGTTAACAGGTTCTATACCAGATGAGATTTTCAGTTTGCAGAAGCTGAGTAAGCTTCTCCTTCTTGGAAATTCATTAACAGGAAGATTACCAGCCAGTGTTGCAAAATGTCAATCTTTGGTTAGATTGAGAGTTGGAGAGAATCAGCTTTCAGGAGAGATTCCTAAAGAGATAGGACAGTTGCAGAATCTTGTGTTTCTTGATTTGTATATGAATCATTTCTCCGGAAGATTACCGGTTGAGATTGCGAACATCACGGTTCTTGAGCTATTAGATGCTCATAACAACTACCTCGGTGGAGAAATTCCATCCCTGATTGGTGAGCTTGAAAATTTGGAGCAGCTTGATCTTAGTAGAAACAGTTTGACAGGTGAAATTCCTTGGAGCTTTGGGAACTTGAGCTATTTGAACAAGCTTATTCTCAACAATAATTTATTAACAGGCTCAATACCAAAATCTGTTAGAAATCTACAGAAGCTAACTCTTTTGGATTTGAGTTATAATAGCTTATCTGGTAGCATACCTCCAGAGATTGGTCATGTTACAAGCCTAACAATCAGTTTGGATTTGAGCTCAAATTCGTTCATTGGTGAAATACCAGATTCAATGTCTGCTTTGACACAGTTACAATCACTTGATCTTTCAAGGAACATGCTTTTTGGAGGAATTAAGGTTCTTGGTTCTCTTACTAGTCTCACTTCACTCAATATCTCCTACAACAACTTCTCAGGTCCTATTCCAGTAACTCCATTCTTCAAAACTCTAACTTCTAGTTCATATCTTCAGAACCGGCATCTGTGTCAGTCCGTTGACGGTACTACATGTTCTTCAAGTCTGATTCAAAAGAATGGTTTAAAATCTGCAAAAACCATAGCTATGATCACAATTATTCTAGCTTCGGTTACCATAATTGTCATTGCGTCGTGGATTCTAGTAACACGTAGTAATCATCGGTACAATGTTGAAAAGGCTTTGAGGATATCAGGTTCCGCGTCAGGAGCTGAGGATTTCTCTTATCCTTGGACTTTCATACCATTTCAGAAACTGAATTTCAGCATAGAAAATATATTGGATTGCTTGAAAGATGAAAACGTGATTGGAAAAGGTTGTTCTGGTGTTGTGTATAAGGCTGAGATGCCGCGCGGAGAGGTAATAGCAGTGAAGAAGCTTTGGAAAACAAGCAAAGGAGATGAAATGGTCGATTCTTTTGCTGCTGAGATTCAGATTCTCGGCTACATTCGGCATAGGAACATTGTGAGGCTCATAGGTTATTGTTCTAATGGGAGTGTTAAGCTACTTCTCTATAACTTTATCCAAAATGGTAATCTTAGACAACTTTTGGAAGGGAATAGAAACTTAGACTGGGAAACTAGATACAAGATCGCTGTTGGTTCAGCTCAAGGTTTAGCTTATCTTCATCATGATTGTGTCCCATCAATTCTACACAGAGATGTTAAGTGCAATAACATACTTCTAGATTCCAAATTTGAGGCATATATTGCAGATTTTGGCCTTGCAAAGCTAATGAATTCACCAAATTATCATCATGCAATGTCCAGAGTTGCTGGTTCCTATGGCTACATTGCCCCAGAGTATGGCTACACCATGAACATAACAGAGAAGAGCGACGTCTACAGTTATGGAGTGGTTTTGCTAGAGATACTAAGTGGGAGAAGTGCAGTTGAAGATGGACAACACGTTGGAGATGGACAACACATAGTTGAATGGGTGAAGAAGAAAATGGCAAGCTTTGAACCAGCTGTGTCAATACTAGATACAAAGCTTCAAAGTCTACCAGATCAAGTGGTGCAAGAGATGCTTCAAACACTTGGAATCGCTATGTTTTGTGTAAATTCTTCGCCAGTTGAAAGACCAACTATGAAGGAAGTTGTTGCATTACTGATGGAAGTGAAGAGTCAGCCTCATGAGGAGATGGGGAAAACCTCTCAACCTTTAATCAAGCAGTCATCAACTCAATGCTGA 3228 0.3894 MENISVTSLFFCLLFFSITKIQVITSLSPDGQALLSLATSSPSILSSWNPSTSTPCSWKGITCSPQSRVISLSIPDTFLNLTSLPSQLSSLTMLQLLNLSSTNLSGSIPPSFGQLSHLQLLDLSSNSLTGSIPNELGSLSSLQFLFLNSNRLTGTIPKQFSNLTSLEVLCLQDNLLNGSIPSQLGSLKSLQQFRIGGNPFLTGELPSQLGLLTNLTTFGAAATSLSGSIPSSFGNLINLQTLALYDTEISGSIPPELGLCSELRNLYLHMNNLTGSIPFQLGKLQKLTSLLLWGNTLSGKIPSEISNCSSLVIFDVSSNDLTGEIPGDFGKLVVLEQLHLSDNSLTGQIPWQLSNCTSLATVQLDKNQLSGTIPYQLGKLKVLQSFFLWGNLVSGTIPPSFGNCSELYALDLSRNKLTGSIPDEIFSLQKLSKLLLLGNSLTGRLPASVAKCQSLVRLRVGENQLSGEIPKEIGQLQNLVFLDLYMNHFSGRLPVEIANITVLELLDAHNNYLGGEIPSLIGELENLEQLDLSRNSLTGEIPWSFGNLSYLNKLILNNNLLTGSIPKSVRNLQKLTLLDLSYNSLSGSIPPEIGHVTSLTISLDLSSNSFIGEIPDSMSALTQLQSLDLSRNMLFGGIKVLGSLTSLTSLNISYNNFSGPIPVTPFFKTLTSSSYLQNRHLCQSVDGTTCSSSLIQKNGLKSAKTIAMITIILASVTIIVIASWILVTRSNHRYNVEKALRISGSASGAEDFSYPWTFIPFQKLNFSIENILDCLKDENVIGKGCSGVVYKAEMPRGEVIAVKKLWKTSKGDEMVDSFAAEIQILGYIRHRNIVRLIGYCSNGSVKLLLYNFIQNGNLRQLLEGNRNLDWETRYKIAVGSAQGLAYLHHDCVPSILHRDVKCNNILLDSKFEAYIADFGLAKLMNSPNYHHAMSRVAGSYGYIAPEYGYTMNITEKSDVYSYGVVLLEILSGRSAVEDGQHVGDGQHIVEWVKKKMASFEPAVSILDTKLQSLPDQVVQEMLQTLGIAMFCVNSSPVERPTMKEVVALLMEVKSQPHEEMGKTSQPLIKQSSTQC* 1076
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3596 1075 SUPERFAMILY L domain-like 362 688 - -
Mtr1g3596 1075 ProSitePatterns Serine/Threonine protein kinases active-site signature. 895 907 IPR008271 GO:0004672|GO:0006468
Mtr1g3596 1075 PRINTS Leucine-rich repeat signature 118 131 - -
Mtr1g3596 1075 PRINTS Leucine-rich repeat signature 524 537 - -
Mtr1g3596 1075 SMART LRR_typ_2 621 648 IPR003591 -
Mtr1g3596 1075 SMART LRR_typ_2 115 138 IPR003591 -
Mtr1g3596 1075 SMART LRR_typ_2 91 114 IPR003591 -
Mtr1g3596 1075 SMART LRR_typ_2 284 308 IPR003591 -
Mtr1g3596 1075 SMART LRR_typ_2 404 428 IPR003591 -
Mtr1g3596 1075 SMART LRR_typ_2 572 596 IPR003591 -
Mtr1g3596 1075 SMART LRR_typ_2 524 547 IPR003591 -
Mtr1g3596 1075 SMART LRR_typ_2 163 187 IPR003591 -
Mtr1g3596 1075 SMART LRR_typ_2 332 356 IPR003591 -
Mtr1g3596 1075 SMART LRR_typ_2 139 162 IPR003591 -
Mtr1g3596 1075 SMART LRR_typ_2 236 260 IPR003591 -
Mtr1g3596 1075 Pfam Leucine rich repeat 94 152 IPR001611 GO:0005515
Mtr1g3596 1075 Pfam Leucine rich repeat 526 585 IPR001611 GO:0005515
Mtr1g3596 1075 Pfam Leucine rich repeat 383 441 IPR001611 GO:0005515
Mtr1g3596 1075 SUPERFAMILY L domain-like 39 394 - -
Mtr1g3596 1075 ProSiteProfiles Protein kinase domain profile. 775 1060 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g3596 1075 ProSitePatterns Protein kinases ATP-binding region signature. 781 804 IPR017441 GO:0005524
Mtr1g3596 1075 PANTHER - 8 1071 - -
Mtr1g3596 1075 SUPERFAMILY Protein kinase-like (PK-like) 757 1049 IPR011009 -
Mtr1g3596 1075 Gene3D Phosphorylase Kinase; domain 1 752 852 - -
Mtr1g3596 1075 Pfam Leucine rich repeat N-terminal domain 28 64 IPR013210 -
Mtr1g3596 1075 Gene3D Transferase(Phosphotransferase) domain 1 853 1072 - -
Mtr1g3596 1075 SMART serkin_6 775 1053 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g3596 1075 Pfam Protein kinase domain 777 1046 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g3596 1075 PANTHER UNNAMED PRODUCT 8 1071 - -
Mtr1g3596 1075 Gene3D Ribonuclease Inhibitor 179 277 IPR032675 -
Mtr1g3596 1075 Gene3D Ribonuclease Inhibitor 374 468 IPR032675 -
Mtr1g3596 1075 Gene3D Ribonuclease Inhibitor 566 692 IPR032675 -
Mtr1g3596 1075 Gene3D Ribonuclease Inhibitor 469 565 IPR032675 -
Mtr1g3596 1075 Gene3D Ribonuclease Inhibitor 278 373 IPR032675 -
Mtr1g3596 1075 Gene3D Ribonuclease Inhibitor 30 178 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3596 Mtr-Chr1 47652410 47656542 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3596 26 1069 Receptor kinase-like Gene Family AT5G56040 45.472 0.0 850
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Mtr1g3596 Pkinase 7.2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3596 - - ccaj:109812175 1754.95