Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3590 ATGGCTGCGATTTCATCACCAATGGTTCAGTCTCCGACTGTGGTGGCTCCGTCTTCGGCAGCATTGACCGGAGGACCATTTGCGAATGCGTCGCTTTACGTTGGCGATCTCGAAGGGAGTGTGAACGAAGGACAGCTTTTTGATCTGTTCAGCCAAGTCGCTCAGGTTGTTTCAATTAGAGTTTGTAGAGATCAGACTAGGCGATCCTCTCTTGGTTATGCTTATGTCAACTTCACCAATGCTCAGGATGCGGCCAATGCAAAGGAACTTCTCAACTTCACTCCTCTGAATGAGAAACCTATCCGTATCATGTTTTCTCAACGCGATCCAAGTGTTCGGAAAAGTGGATCGGGCAATGTGTTCATTAAGAACCTGGACACATCAATTGATCACAAGGCATTGCATGACACTTTTGCTGCGTTTGGCCCTGTACTTTCTTGTAAGGTGGCTCTTGACGGTAATGGTCAGTCAAAAGGGTATGGCTTTGTTCAGTTTGACAATGAAGAAGCTGCAAAGAGTGCCATCAAACAGTTGGATGGCATGTTGATAAATGATAAACAAGTCTATGTTGGATTTTTTGTTCGCCACCAGGAAAGGGCTAGGACAAATGGATCGCCCAAATTCACTAATGTGTATGTGAAAAATATTTCTGAAGCATCAACTGATGAGGACTTGAAACAACTTTTTGGCCCCTTTGGCATGATAACTAGTGCAACAGTCATGAAAGATGCAAATGGGAAATCTAGATGCTTTGGTTTTGTGAATTTTCAAAGTCCAGATTCAGCTGCTGCTGCAGTTGAGAAGTTAAATGGAACTGCTATCAATGATGACAAGGTTTTATTTGTGGGGAGAGCTCAGAGGAAAGCAGAAAGAGAGAATGAGTTGAAAGCCAAGTTCGAGCAGGAAAGAATTAGCAGATATGAGAAATTGCAAGGGGCTAATTTGTACCTGAAAAATCTTGATGACGATTTTAATGAAGAAAAGTTGAAAGATCTATTTTCTGAGTTTGGAACTGTAACATCTTGCAGGGTGATGTTGGATTCACATGGTCATAGCAAGGGTTCTGGTTTCGTGGCCTTTTCTACTCCCGAGGAAGCAAATAAAGCTTTGAATGAAATGAATGGAAAGTTGGTGGGAAGAAAGCCTTTGTTTGTTGCTGTGGCTCAGCGCAAAGAAGAAAGGAAGGCTCAGTTGCAGGCACATTTTGCTCAAATCCGTGCCCCTGGTGGAATGGCACCGCTGGCTGCAGAGCTTACTGGGTACCATCCAGGGGCACCAAGACTTGCCCCTCAGCAGTTGTATTACGGTCAAGGCACACCTGGCTTCATACCACCTCAGCCTGCTGGATTTGGTTTCCAGCAGCAGATCTTGCCTGGAATGCGGCCTGGTGTTGCTCCGAATTTTGTTATGCCATATCAGCTCCAAAGACAGGGTCAAAATGGGCAACGGATAGGTGCTCGACGAAATGGAAACCTCCAACATGTGCAGCAGAATCAAATGTTGCATCGTAACTCCAACCAAGGGTATAGATATATGGCCAACAATCGAAATGGCATGGATCCTTCTGGAGTTCATCAAGGTCTAGCAGGTCCAATGTTGCCCATGACATTTGATGGTTCTGGAGTTTCTGCTGCTCCTATTGATAATCAGCGTCCAGGGTCTACATCACTTGCCTCTGCTTTAGCTTCTGCTACCCCAGACAATCAGCGCATGATGCTGGGTGAACATCTATATCCCCTCGTGGACCGTCTTACACCAAACCAACATACTGCAAAGGTGACAGGGATGTTGCTTGAAATGGACCAATCCGAAGTGATTCATCTTATTGAATCTCCCGATGCCCTAAAAATAAAGGTCTCTGAGGCATTACAGGTCCTTCATGAAGCTGCATCGGGATCTGAAGTTGGTGATCAGCTTGGTTCATTGTCATTGAACAAATGA 1941 0.4508 MAAISSPMVQSPTVVAPSSAALTGGPFANASLYVGDLEGSVNEGQLFDLFSQVAQVVSIRVCRDQTRRSSLGYAYVNFTNAQDAANAKELLNFTPLNEKPIRIMFSQRDPSVRKSGSGNVFIKNLDTSIDHKALHDTFAAFGPVLSCKVALDGNGQSKGYGFVQFDNEEAAKSAIKQLDGMLINDKQVYVGFFVRHQERARTNGSPKFTNVYVKNISEASTDEDLKQLFGPFGMITSATVMKDANGKSRCFGFVNFQSPDSAAAAVEKLNGTAINDDKVLFVGRAQRKAERENELKAKFEQERISRYEKLQGANLYLKNLDDDFNEEKLKDLFSEFGTVTSCRVMLDSHGHSKGSGFVAFSTPEEANKALNEMNGKLVGRKPLFVAVAQRKEERKAQLQAHFAQIRAPGGMAPLAAELTGYHPGAPRLAPQQLYYGQGTPGFIPPQPAGFGFQQQILPGMRPGVAPNFVMPYQLQRQGQNGQRIGARRNGNLQHVQQNQMLHRNSNQGYRYMANNRNGMDPSGVHQGLAGPMLPMTFDGSGVSAAPIDNQRPGSTSLASALASATPDNQRMMLGEHLYPLVDRLTPNQHTAKVTGMLLEMDQSEVIHLIESPDALKIKVSEALQVLHEAASGSEVGDQLGSLSLNK* 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3590 646 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 313 390 IPR000504 GO:0003723
Mtr1g3590 646 Gene3D - 119 204 IPR012677 -
Mtr1g3590 646 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 30 108 IPR000504 GO:0003723
Mtr1g3590 646 SMART rrm1_1 314 386 IPR000504 GO:0003723
Mtr1g3590 646 SMART rrm1_1 119 191 IPR000504 GO:0003723
Mtr1g3590 646 SMART rrm1_1 31 104 IPR000504 GO:0003723
Mtr1g3590 646 SMART rrm1_1 210 283 IPR000504 GO:0003723
Mtr1g3590 646 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 553 631 IPR002004 GO:0003723
Mtr1g3590 646 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 30 626 IPR006515 GO:0003723
Mtr1g3590 646 CDD RRM3_I_PABPs 208 288 - -
Mtr1g3590 646 CDD RRM4_I_PABPs 312 390 - -
Mtr1g3590 646 Gene3D - 552 631 - -
Mtr1g3590 646 Gene3D - 311 410 IPR012677 -
Mtr1g3590 646 SUPERFAMILY RNA-binding domain, RBD 118 288 IPR035979 GO:0003676
Mtr1g3590 646 CDD RRM1_I_PABPs 31 110 - -
Mtr1g3590 646 Coils Coil 282 302 - -
Mtr1g3590 646 SMART poly_2 565 629 IPR002004 GO:0003723
Mtr1g3590 646 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 118 195 IPR000504 GO:0003723
Mtr1g3590 646 Pfam Poly-adenylate binding protein, unique domain 561 626 IPR002004 GO:0003723
Mtr1g3590 646 CDD RRM2_I_PABPs 116 192 IPR045305 -
Mtr1g3590 646 PANTHER RNA BINDING PROTEIN 25 634 - -
Mtr1g3590 646 SUPERFAMILY PABC (PABP) domain 467 631 IPR036053 GO:0003723
Mtr1g3590 646 SMART rrm2_1 119 191 IPR003954 GO:0003676
Mtr1g3590 646 SMART rrm2_1 31 104 IPR003954 GO:0003676
Mtr1g3590 646 SMART rrm2_1 210 282 IPR003954 GO:0003676
Mtr1g3590 646 SMART rrm2_1 314 386 IPR003954 GO:0003676
Mtr1g3590 646 Gene3D - 25 118 IPR012677 -
Mtr1g3590 646 SUPERFAMILY RNA-binding domain, RBD 15 115 IPR035979 GO:0003676
Mtr1g3590 646 SUPERFAMILY RNA-binding domain, RBD 309 403 IPR035979 GO:0003676
Mtr1g3590 646 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 209 287 IPR000504 GO:0003723
Mtr1g3590 646 PANTHER POLYADENYLATE-BINDING PROTEIN 25 634 - -
Mtr1g3590 646 Gene3D - 205 310 IPR012677 -
Mtr1g3590 646 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 32 102 IPR000504 GO:0003723
Mtr1g3590 646 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 120 188 IPR000504 GO:0003723
Mtr1g3590 646 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 315 382 IPR000504 GO:0003723
Mtr1g3590 646 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 211 278 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3590 Mtr-Chr1 47605070 47609548 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3590 29 640 Eukaryotic Initiation Factors Gene Family AT1G71770 57.393 0.0 693
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3590 K13126 - gmx:100783163 1056.97