Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3581 ATGGGTGCAGTTTCGGAATCTGCTTCTGCTGATTGTTTCAGTGAGGTGATGTCGTCGATGCCCGGTTTCCGCTTTCATCCTACAGATGAGGAGTTGGTGATGTATTATCTGAAAAGGAAGATTTGTGGGAAGAAGTTGAAGTTCAACGTTATCAAAGAAACCGATGTGTACAAGTGGGATCCTGAGGATTTGCCAGAACAATCTTTCTTAAAAACTGGAGATAGGCAATGGTTCTTTTTCTGTCATAGAGATAGGAAATATCCCAACGGTGGAAGGTCTAGTCGAGCAACTAGACACGGCTACTGGAAAGCTACTGGAAAAGATCGAAATGTGATATACAATTCTCGGTCAGTTGGAGTGAAAAAGACACTTGTTTTCTATCTTGGCAGAGCTCCTAGTGGTGAGCGAACTGATTGGGTTATGCATGAGTACACCATGGATGAAGATGAGCTTAGGACATGCCGTGATGTTAAGGACTATTATGCACTTTACAAGGTTTTCAAGAAAAGTGGACCGGGTCCTAAGAACGGTGAGCAGTATGGTGCACCATTTAAAGAAGAAGAATGGGCAGATGATGATGTTGTAGATTTTAATGTAAATTCAGTTGACCGGGAGGTTCCAGAGGCTGCTATTGACAATGTTATTGATCAGCATCAGCTGCAGCCGTTGTTTGATGATGAAATTGATGAAATCATTAAAGGGATGCTTGATGTTGAGCCTGTCCTTGACCAGCAACATGTGAATGGTTATGTTGACTTTCCTCAGGTTGATGATGAAGAAACACGAAATGTGGTCATGGATCAATTCTACGAGGCCATGGTATTCCCTGATCCAAGTGAAAAACAGCAATCTAGCAGTCAGCTTTATGATGCGCAGCCCAGCTTTGACTTCAATCATCAATCAGTTGATTCTCACTTGTGTATTTCTGAAGCACCTGAGGTCACTTCCACTCCGAACATTCAAAGCGGGGAGGGGCTTGTCTTTTATGAGGAAGGCTTCTTGGAAATTAATGATCTCATTGATACCGAATCTACATTTTCAAATACGGATAAGCTTAACAACGATCTCATTGAGAACCTCCAGTTTGAAGATGTGTTGAGTGAATTTGATCCTTACCAAGATGCAGAGATGTTTCTTTGTGGTCTGGGGTCTATTAACGAAGAAACAGTTTCACATGCATATATGAATAACGCTGGCAGCAATATTGAAAATCAGAGTTACCAGTTGTTGTCCAATCCAGAAGACGTAAATCAAACTGTTGATGAATTCTGGATGCATGTTGAAAGAAACACCCGCAGTCCAGCTGAAGGTTATGATGGTTCTTTCTCTCTAACAAATCCAGGTGTCGTGTGTGACTCTGTCGGCTTTCCTACTGAAAGCACTGAAAATCAAAGAAGCACTGTCGAAGATGTTAAAACAAGTAGATTATCCTCTGCTCTATGGGCCTTTGTTGATTCAATACCTACTACTCCTGCATCAGCTGCTGAAAATCCTTTGGTGAATCGGGCTTTGAATCGAATGTCTAGCTTCAGCAGGGTGAAGATCAAGCCCACCGACAACAACATTGCTGCAGGTAATAATGACACTGCAACTATGAAGAGAGCAGGCAGAAAGGGAGTCTCATTCCTTTTCTTCCCGATTCTTATTGCTTTATGTGCTTTCTTGTGGGTTTCTATTGGAAATTTAAGACTATTAGGGAGATGTGTCTCCCCTTGA 1716 0.4202 MGAVSESASADCFSEVMSSMPGFRFHPTDEELVMYYLKRKICGKKLKFNVIKETDVYKWDPEDLPEQSFLKTGDRQWFFFCHRDRKYPNGGRSSRATRHGYWKATGKDRNVIYNSRSVGVKKTLVFYLGRAPSGERTDWVMHEYTMDEDELRTCRDVKDYYALYKVFKKSGPGPKNGEQYGAPFKEEEWADDDVVDFNVNSVDREVPEAAIDNVIDQHQLQPLFDDEIDEIIKGMLDVEPVLDQQHVNGYVDFPQVDDEETRNVVMDQFYEAMVFPDPSEKQQSSSQLYDAQPSFDFNHQSVDSHLCISEAPEVTSTPNIQSGEGLVFYEEGFLEINDLIDTESTFSNTDKLNNDLIENLQFEDVLSEFDPYQDAEMFLCGLGSINEETVSHAYMNNAGSNIENQSYQLLSNPEDVNQTVDEFWMHVERNTRSPAEGYDGSFSLTNPGVVCDSVGFPTESTENQRSTVEDVKTSRLSSALWAFVDSIPTTPASAAENPLVNRALNRMSSFSRVKIKPTDNNIAAGNNDTATMKRAGRKGVSFLFFPILIALCAFLWVSIGNLRLLGRCVSP* 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3581 571 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 15 570 - -
Mtr1g3581 571 SUPERFAMILY NAC domain 15 169 IPR036093 GO:0003677|GO:0006355
Mtr1g3581 571 ProSiteProfiles NAC domain profile. 19 169 IPR003441 GO:0003677|GO:0006355
Mtr1g3581 571 Pfam No apical meristem (NAM) protein 21 145 IPR003441 GO:0003677|GO:0006355
Mtr1g3581 571 PANTHER NAC TRANSCRIPTION FACTORS 2 15 570 - -
Mtr1g3581 571 Gene3D NAC domain 28 171 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3581 Mtr-Chr1 47525577 47529975 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3581 4 569 NAC Transcription Factor Family AT1G34190 42.785 2.58e-139 414
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Mtr1g3581 NAM 6.2e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3581 - - mtr:MTR_1g097300 1164.44