Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3580 ATGAAGTCAAGCAATGTATTACTTGACAATGAAATGGAGTCAAGAGTCTTGAATTTCGGAATGGCAAGACTAATAAGTGCACTTGATACACATCTCAGTGTAAGCACACTAGCAGGAACACCTGGATATGTTCCACCAGAGTATTACCAAAGTTTCAAGTGCACTGCAAAGGGTGATGTTTATTCATTTGGTGTTGTAATGTTGGAACTTCTTAATGGGAAAAAGCCTGATGATAAGGAGGATTTTGGTGACACAAACTTGGTTGGATGGGTTAAGATTAAGGTGCACGAAGGGAAACAAATGGATGTAATTAACACTGATTTACTTTTGGAGACTCAAGGAGGAACAAATGAAGCATAA 360 0.3833 MKSSNVLLDNEMESRVLNFGMARLISALDTHLSVSTLAGTPGYVPPEYYQSFKCTAKGDVYSFGVVMLELLNGKKPDDKEDFGDTNLVGWVKIKVHEGKQMDVINTDLLLETQGGTNEA* 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3580 119 Gene3D Transferase(Phosphotransferase) domain 1 1 118 - -
Mtr1g3580 119 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 1 119 - -
Mtr1g3580 119 Pfam Protein kinase domain 1 79 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g3580 119 SUPERFAMILY Protein kinase-like (PK-like) 1 84 IPR011009 -
Mtr1g3580 119 PANTHER LEUCINE-RICH RECEPTOR-LIKE KINASE FAMILY PROTEIN 1 119 - -
Mtr1g3580 119 ProSiteProfiles Protein kinase domain profile. 1 119 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3580 Mtr-Chr1 47522035 47522394 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3580 1 114 Receptor kinase-like Gene Family AT1G55610 66.957 3.33e-48 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Mtr1g3580 Pkinase 2.2e-14 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3580 - - mtr:MTR_1g097290 242.276