LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mtr1g3579	ATGGTAGTAAAGAGGAAGAAGATTGGAGGAGCAACGCTTCACCTTCTTCCTCTCGATTTCATGGCTGCTCCTCAGTCCCAACATCGCACTGTCTTTGTTGGGAACATACCATATGATGCTACAGAGGAACAGCTTAAGGAAATTTGTCGGGAGGTTGGTCCTGTTATCAGTTTTAGATTAGTTACTGATAGAGAAACTGGGAAACCTAAGGGTTACGGATTCTGTGAGTATACGGATGAAGAAACGGCGTTAAGTGCTCGTAGGAATCTTCAGGGTTATGAAATTAATGGACGTCAATTACGTGTTGATTTCGCGGAGAATGATAAAGGGAATGATAGAAATAAAGATCAGGGTCGCGGGGGACCAGGAATGACAACAAATGCAGATCCTCAGAAACAAGTAGGCATCCCAGCTGTTCAAGGGGAATCCACTCAAGCAGCTCAACATCAACCTATGGGTCTTCATATTGCCGTAACAGCTGCAGCTGTCATGACTGCAGCTCTAGGTGGTGCTCAGACTGGCATCCCGTCAAATCAAAATGGTTTGCAGAGTCAGCAAGCATTAGCAAATGATCCTTTAACTTTGCATCTGGCTAAGATGTCCAGGAGTCAGCTATCTGAGATAATCTCAGAGCTTAAGGGAATGGCTACACACAACAAGGACTTGTCTCGCCAGCTGTTGCTTTCAAGGCCACAGTTGCCTAAGGCTCTTTTTCAGGCTCAGATAATGCTAGGGATGGTCAACCCCCAAATGTTACAAATGCCAAACCTTAGACAAGTTTCAGATCAACCCTCGCAGTCTTTAATGAATGAAGGCCACCTTGGTCAGACTCAACAAACATTGGTTCCGACTGTGGCTGGTCTACCTCCTTATGGACAGAGCAAGTTGCAGTTTGGCTTGACACCTTATATTCAAGAAGGCCAAGTCAGCACTCTCCCTCATAACCCTTCGGTTCCTAGTCAATTGACCGCAAATCCAAAGCCTCCTCTGCAGCCCAGAATTCCCCCTCAACATCATCAAAGCAACCATTTTGTACAGCCTGGAGCAGGGCAGAATAATTTAATACTTCCTTCCATACGTCCCCCAACTACGGGCAATTTTTCTGCTAGGCCTCCATTTCAACAGGCAAATTCAACTGTCGTGAACCAGCAACCGCATGCCTCATTTCTACAACAACCAGTACGTGTTGGAAGCTCAACTGTCTCACATAATATTCATATGGTTCGTCCAGATGCAAGCTTTCAGGCTGGTCCCTCCATGCCATCTGGTGTTTCTCAGTTATTTAGCAAGGAAGGTGATAGACCTTCCAACGCTCTTGAGGATTGGGCCAAGAGTAGTAGTAAATATTCCAACATATCTTTCGGAGTAGAGAATACAGGCGTGGTTCATGATAATCCAGAATCCTTTACTCGACCATCAAAGCTCACTAGATTGAATGATGGAAGGGGTCTCTCTGCTGGGACTTCAGACGTACCTATTTCCAACGGATCATCCCATGTTCTCGGAAGTAGCTCATTACCTGTACCTGCAGTTCCTAAAGCAGATGTGCGGCACTCTGATCAACAATCTTCACAGCTTCCATCTGATGTGGAGTCTGTTTTACTGCAACAAGTGTTGAATCTAACACCAGAGCAATTGAGTTCTTTGCCACCAGAGCAGCAACAACAGGTCATTCAGCTCCAACAAGCGCTTAAGCGAGATCAGATGCAGCACTCATAA	1719	0.4567	MVVKRKKIGGATLHLLPLDFMAAPQSQHRTVFVGNIPYDATEEQLKEICREVGPVISFRLVTDRETGKPKGYGFCEYTDEETALSARRNLQGYEINGRQLRVDFAENDKGNDRNKDQGRGGPGMTTNADPQKQVGIPAVQGESTQAAQHQPMGLHIAVTAAAVMTAALGGAQTGIPSNQNGLQSQQALANDPLTLHLAKMSRSQLSEIISELKGMATHNKDLSRQLLLSRPQLPKALFQAQIMLGMVNPQMLQMPNLRQVSDQPSQSLMNEGHLGQTQQTLVPTVAGLPPYGQSKLQFGLTPYIQEGQVSTLPHNPSVPSQLTANPKPPLQPRIPPQHHQSNHFVQPGAGQNNLILPSIRPPTTGNFSARPPFQQANSTVVNQQPHASFLQQPVRVGSSTVSHNIHMVRPDASFQAGPSMPSGVSQLFSKEGDRPSNALEDWAKSSSKYSNISFGVENTGVVHDNPESFTRPSKLTRLNDGRGLSAGTSDVPISNGSSHVLGSSSLPVPAVPKADVRHSDQQSSQLPSDVESVLLQQVLNLTPEQLSSLPPEQQQQVIQLQQALKRDQMQHS*	573

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mtr1g3579	572	PANTHER	CLEAVAGE STIMULATION FACTOR SUBUNIT 2	21	567	-	-
	Mtr1g3579	572	MobiDBLite	consensus disorder prediction	460	475	-	-
	Mtr1g3579	572	Gene3D	-	21	135	IPR012677	-
	Mtr1g3579	572	MobiDBLite	consensus disorder prediction	460	529	-	-
	Mtr1g3579	572	SUPERFAMILY	RNA-binding domain, RBD	20	126	IPR035979	GO:0003676
	Mtr1g3579	572	Pfam	Hinge domain of cleavage stimulation factor subunit 2	184	253	IPR025742	-
	Mtr1g3579	572	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	29	107	IPR000504	GO:0003723
	Mtr1g3579	572	MobiDBLite	consensus disorder prediction	101	116	-	-
	Mtr1g3579	572	Gene3D	-	520	568	IPR038192	-
	Mtr1g3579	572	MobiDBLite	consensus disorder prediction	418	432	-	-
	Mtr1g3579	572	MobiDBLite	consensus disorder prediction	101	131	-	-
	Mtr1g3579	572	MobiDBLite	consensus disorder prediction	488	504	-	-
	Mtr1g3579	572	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	31	101	IPR000504	GO:0003723
	Mtr1g3579	572	CDD	RRM_CSTF2_CSTF2T	31	105	-	-
	Mtr1g3579	572	MobiDBLite	consensus disorder prediction	412	436	-	-
	Mtr1g3579	572	Pfam	Transcription termination and cleavage factor C-terminal	534	566	IPR026896	GO:0031124
	Mtr1g3579	572	PANTHER	CLEAVAGE STIMULATION FACTOR, 3' PRE-RNA, SUBUNIT 2	21	567	-	-
	Mtr1g3579	572	Gene3D	-	179	255	-	-
	Mtr1g3579	572	SMART	rrm1_1	30	103	IPR000504	GO:0003723

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mtr1g3579	Mtr-Chr1	47512262	47518648	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mtr1g3579	19	115	Eukaryotic Initiation Factors Gene Family	AT3G16380	29.897	6.18e-08	53.5

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mtr1g3579	K14407		-	gmx:100794399	713.375