Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3574 ATGGAAAATATTCCCCCATTGATTTTCAAAAACCCAATAAGAAGAACCTCAAGGAGATCAACAATGTATCTTGGTGTTAGAAAAAGACCATGGGGAAGATATGCAGCTGAAATTAGGAACCCTTATACCAAAGAGAGACATTGGTTAGGCACATTTGACACTGCAGAAGAAGCTGCAGTGGCCTATGATATTTCATCTATTAAGATTTGTGGCATTGATAATGCTAGAACTAATTTTCATTACCCTTTTGTATCTCATCCACAGCAACCTCCTCGTTTATTACTTCCTGCACCCCCACCACCCACCCCAGAGTTGGATGCAAGTATCCCTGAGATGAATGTTGCTTTTGATGGTGATGATGAATCAATGGTTATTGCTTCTATCTTGCAAAGTTTTTCTAATTCTGGTAGCTGTTCTTTATAA 423 0.3877 MENIPPLIFKNPIRRTSRRSTMYLGVRKRPWGRYAAEIRNPYTKERHWLGTFDTAEEAAVAYDISSIKICGIDNARTNFHYPFVSHPQQPPRLLLPAPPPPTPELDASIPEMNVAFDGDDESMVIASILQSFSNSGSCSL* 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3574 140 PRINTS Ethylene responsive element binding protein signature 23 34 IPR001471 GO:0003700|GO:0006355
Mtr1g3574 140 PRINTS Ethylene responsive element binding protein signature 45 61 IPR001471 GO:0003700|GO:0006355
Mtr1g3574 140 CDD AP2 23 79 IPR001471 GO:0003700|GO:0006355
Mtr1g3574 140 SUPERFAMILY DNA-binding domain 22 81 IPR016177 GO:0003677
Mtr1g3574 140 Gene3D AP2/ERF domain 22 81 IPR036955 GO:0003700|GO:0006355
Mtr1g3574 140 SMART rav1_2 22 86 IPR001471 GO:0003700|GO:0006355
Mtr1g3574 140 ProSiteProfiles AP2/ERF domain profile. 22 80 IPR001471 GO:0003700|GO:0006355
Mtr1g3574 140 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 131 - -
Mtr1g3574 140 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF088 1 131 - -
Mtr1g3574 140 Pfam AP2 domain 24 64 IPR001471 GO:0003700|GO:0006355
Mtr1g3574 140 ProSiteProfiles CUT domain profile. 1 64 IPR003350 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3574 Mtr-Chr1 47486191 47486639 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3574 8 89 AP2-EREBP Transcription Factor Family AT1G12890 57.143 4.53e-28 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mtr1g3574 AP2 2.3e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3574 - - gmx:100816937 222.246