Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3566 ATGGCTTCTTCAAATGATGATTGGAAGCCAAGACTTGGAATGGAATTTGACACTAGAGAAGAGGCTGAACAGTTTTATCTTGCTTATGGTTTACGTGAGGGCTTCGGAGTTAGAGTACGCTTTACAAACTGGAAGAAAGACGGTAGTGTATCGTCATGTAGGTTTGTTTGTTGTAAGGAAGGAATACGGAAGAAAGAGGATAAATGTGCATATGAAGGAAAAATTCGGAGAGGCGAGACTAGAACGAAATGCTTAGCAAGAATTACACTTTCGAGTAAAAATGGAAAGTTGGTTATCAATGAGTTTGTAGAAAACCATAACCATGATCTACTAAATCGAGAGACAACGCACATGCTTCGACCACATAGAAAGATAACTGAAGTACAAGCATATGAGATTGATATGGCCGATGACTCTGGATTAAGGCAGAAGGAAGTGTATCAACTTATGAGCACACATGCAGGGCATAGCGCTAATGTTGGATTTACAGAGGTGGATGTAAGAAACTATATCACTACAAAAAGACAAAGAAGTATGGTGTATGGTGATGCTGGATATCTTTCACGGTATTTTCAACGACAGTTGTTGGAGAATCCGTCCTTCTTTTATGCATATCAGATGGATATAGATGAACAGATTACAAATGTGTTCTGGTGTGATGCAAATATGATTTTGGATTACGGGTATTTTGGTGATGTTGTTTCATTGGACACCACATATTGTACCAACGATGCCAATAGACCGCTTGCCTTTTTTTCTGGTTTCAACCATTATAGAGGTTCGATCATTTTTGGTGCAGCTCTAATGTATGATGAGACAATTCCATCATTTAAATGGTTGTTTGAAACATTCTTACAAGCACACAACAACAAAAAACCAAAGACGATCTTCACTGACCAAGATCAAGCAATGTCTAGGGCACTTGAAGAAGTGATGCCTGAGACTCACCATGGTTTATGCACATGGCATTTGTTGCAGAATGGAATTAAACATCTTGGAAACAGGATGAAGAAAGGAGCTTCTTTGCTAACAGATTTCAGCAAGTGCATGTATGAGATTGGCATTGAAGCAGATTTTGAGAAAGCTTGGTTTGACTTGGTCAATGAACATAATCTTCATGGAACAACTTGGATCAACTCAGTTTATGAAATAAAAAAAAAATGGGCTGCATGTTATATGAAGGAAGCATTAACACTTGGCATGCGAAGTACACAAGTTAGTGAAAGTTTGAATGCTCACTTTAAATGTTGTCTAAAACCGAATTTGGGTATCCTGCAATTCTTCAAACATTTCGAAAGAGTTGTTGGGGAGAAGAGAGAAAAAGAACTGAAATGTGATTATGAGTCCTCACATAAGCTTGCAAGGTTAGTGTATGAAACTTCACCATTACTAATCCAAATGGGAAAGATATACACACACACTATATTTGAGTTGTTTCAAAACGAGTTTAAGTTATTCTTGGCTTTGTCTATACCTATTAGACATGAAACTGACTCTCTATGTGAATATGTCATTACTAATACGAAACATGAAGGATCTTTTAGAGTGTCATTTAATCGTGTTTCAACTTCCATTACTTGTAGTTGTAAGAAGTATGATACATTTGGCATACTTTGTTCCCATGCATTAAAAGTGTTTGAGCTGAACGATGTTAAAGTGATTCCTGATATGTATATTTTAAGAAGGTGGACAAGAGAAGCCCGTTGTGGCATTGTGCAAGATTTTAGGGGAAAAGAGGTTGAACAAGATCCTAAGTTGTCTAGAAATCGAATGTTCAGACAAGTTGTCTCTAAGTTCATTAGAGCGGCAACTGTAGCAGCATCGCATAGTGAAGAAAGTCTCATGTTTGTTGATAAAAGTGTAGATGAAATGTTCAAGAAAGTAACAGAATGTCCAACACAAGGTAGAGACAATGACAACGATCATCCATCATTTGTGAGTTCTGATGCTATGCAACCAAAGGGATTCAAGAAACAACCCAGCTCAAAGGGAACTAAGCGACATAAAAGTTTCCTTGAGCGTCAGCCCAAGAAAAGAAGTGCTCCTCCAAGTAAACACGCTCAATCTAGCCGTGTCGCACCTCAAAGAAGTTCACAGGTTAGAGAATTAACAACTAATATGGTTGATGGAGTATCTTGTTCCGCGCCTCCAACTTATGAGCCCCCGCTAGCACGTGAGGATATGTTTGTTAGTCACACAACTATGTTGATGGCACCTTTTGATGATACAAATATTGGAGCATTACTTTGA 2250 0.3813 MASSNDDWKPRLGMEFDTREEAEQFYLAYGLREGFGVRVRFTNWKKDGSVSSCRFVCCKEGIRKKEDKCAYEGKIRRGETRTKCLARITLSSKNGKLVINEFVENHNHDLLNRETTHMLRPHRKITEVQAYEIDMADDSGLRQKEVYQLMSTHAGHSANVGFTEVDVRNYITTKRQRSMVYGDAGYLSRYFQRQLLENPSFFYAYQMDIDEQITNVFWCDANMILDYGYFGDVVSLDTTYCTNDANRPLAFFSGFNHYRGSIIFGAALMYDETIPSFKWLFETFLQAHNNKKPKTIFTDQDQAMSRALEEVMPETHHGLCTWHLLQNGIKHLGNRMKKGASLLTDFSKCMYEIGIEADFEKAWFDLVNEHNLHGTTWINSVYEIKKKWAACYMKEALTLGMRSTQVSESLNAHFKCCLKPNLGILQFFKHFERVVGEKREKELKCDYESSHKLARLVYETSPLLIQMGKIYTHTIFELFQNEFKLFLALSIPIRHETDSLCEYVITNTKHEGSFRVSFNRVSTSITCSCKKYDTFGILCSHALKVFELNDVKVIPDMYILRRWTREARCGIVQDFRGKEVEQDPKLSRNRMFRQVVSKFIRAATVAASHSEESLMFVDKSVDEMFKKVTECPTQGRDNDNDHPSFVSSDAMQPKGFKKQPSSKGTKRHKSFLERQPKKRSAPPSKHAQSSRVAPQRSSQVRELTTNMVDGVSCSAPPTYEPPLAREDMFVSHTTMLMAPFDDTNIGALL* 750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3566 749 MobiDBLite consensus disorder prediction 682 712 - -
Mtr1g3566 749 Pfam SWIM zinc finger 525 547 IPR007527 GO:0008270
Mtr1g3566 749 MobiDBLite consensus disorder prediction 660 674 - -
Mtr1g3566 749 Pfam MULE transposase domain 233 327 IPR018289 -
Mtr1g3566 749 Pfam FAR1 DNA-binding domain 24 111 IPR004330 -
Mtr1g3566 749 MobiDBLite consensus disorder prediction 630 714 - -
Mtr1g3566 749 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 5 637 IPR031052 GO:0006355
Mtr1g3566 749 SMART 26again6 525 552 IPR006564 GO:0008270
Mtr1g3566 749 PANTHER OS03G0181600 PROTEIN 5 637 - -
Mtr1g3566 749 ProSiteProfiles Zinc finger SWIM-type profile. 514 550 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3566 Mtr-Chr1 47383913 47386338 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Mtr1g3566 MULE 1.1e-26 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3566 - - cam:101507984 979.548