Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3564 ATGGCCGCAAGTTCCGCCACCTCCTCCACCGTTTCTCACCAGAATCCAACCTTCTCCCCCGATTTCCCTTCCAGAATTCCCCTTACTTCCGATCAGGTCAACCACTGCACCAAAGCACTCGCACTGTTGAAGAACAAGCTCCGAAACCCCGACACTATCTTACAAGAGTTCCTTCACTTGCAGGCAAATAGGATTACGCTGAGTGAGTCCACGAGAAGATGCAACGTTGCTCTTAATTCTGTTAATATCAACAAAAACCGATATAAAGATGTTATACCATTTGACAAGAACAGGGTTGTTCTTAATTCAAGTTCAGATTATAGGTCTGAATCACTGGGGTATATCAATGCAAGCTTTATCTTGACTTCTTCCACTGGAACTGTGTCTGAGTTTATAGCCACACAAGGTCCATTGCCACACACTTATGAGGATTTCTGGGAAATGATAATGCAATATAACTGCCCTGCAATAGTGATGCTTACTAAGTTGGTCGACAATTACAAGATGGTGAAGTGTGGAGATTATTTTCAATCTGAAGATAGACCTAGAGAATTTGGTAATATCTCGCTTGCATGTAAATGGACGAAAACTACTGAAACTTCACTTGTACTGCGTCATCTGGAGGTGAACCATAAAGAGGTAGAAGATACACCATTATCTGTTTTTCATATTCAGTATCCTGAGTGGCCTGACCATGGAGTCCCAAACGATACTTTGGCTGTGCGTGAAATTTTGAAAAGATTATACCATTTGCCACCAAACCTTGGCCCAATAGTGGTGCACTGCAGTGCAGGTATTGGTAGAACTGGAACATACTGCACAATTCACAGCACAATTCAGAGAATACTTGCTGGCGATATTTCTGCTATAGATATTGCTAATACAGTATCTGTGTTCCGGTCTCAGCGAATTGGAATGGTTCAGACTCAGGATCAGTACATCTTTTGCTATGAAGCTATCATAGATGAACTTGAAGACCTTGTATCTCAACAATAA 996 0.4177 MAASSATSSTVSHQNPTFSPDFPSRIPLTSDQVNHCTKALALLKNKLRNPDTILQEFLHLQANRITLSESTRRCNVALNSVNINKNRYKDVIPFDKNRVVLNSSSDYRSESLGYINASFILTSSTGTVSEFIATQGPLPHTYEDFWEMIMQYNCPAIVMLTKLVDNYKMVKCGDYFQSEDRPREFGNISLACKWTKTTETSLVLRHLEVNHKEVEDTPLSVFHIQYPEWPDHGVPNDTLAVREILKRLYHLPPNLGPIVVHCSAGIGRTGTYCTIHSTIQRILAGDISAIDIANTVSVFRSQRIGMVQTQDQYIFCYEAIIDELEDLVSQQ* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3564 331 Gene3D Protein tyrosine phosphatase superfamily 28 325 IPR029021 -
Mtr1g3564 331 ProSiteProfiles PTP type protein phosphatase domain profile. 53 323 IPR000242 GO:0004725|GO:0006470
Mtr1g3564 331 SMART ptp_7 220 322 IPR003595 -
Mtr1g3564 331 PRINTS Protein tyrosine phosphatase signature 113 120 IPR000242 GO:0004725|GO:0006470
Mtr1g3564 331 PRINTS Protein tyrosine phosphatase signature 131 151 IPR000242 GO:0004725|GO:0006470
Mtr1g3564 331 PRINTS Protein tyrosine phosphatase signature 219 236 IPR000242 GO:0004725|GO:0006470
Mtr1g3564 331 PRINTS Protein tyrosine phosphatase signature 257 275 IPR000242 GO:0004725|GO:0006470
Mtr1g3564 331 PRINTS Protein tyrosine phosphatase signature 290 305 IPR000242 GO:0004725|GO:0006470
Mtr1g3564 331 PRINTS Protein tyrosine phosphatase signature 306 316 IPR000242 GO:0004725|GO:0006470
Mtr1g3564 331 PANTHER PROTEIN-TYROSINE-PHOSPHATASE PTP1 9 330 - -
Mtr1g3564 331 SMART PTPc_3 52 325 IPR000242 GO:0004725|GO:0006470
Mtr1g3564 331 PANTHER RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE 9 330 - -
Mtr1g3564 331 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 242 314 IPR000387 GO:0016311|GO:0016791
Mtr1g3564 331 CDD PTPc_plant_PTP1 114 318 - -
Mtr1g3564 331 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 36 325 IPR029021 -
Mtr1g3564 331 MobiDBLite consensus disorder prediction 1 24 - -
Mtr1g3564 331 ProSitePatterns Tyrosine specific protein phosphatases active site. 260 270 IPR016130 GO:0016311|GO:0016791
Mtr1g3564 331 Pfam Protein-tyrosine phosphatase 82 321 IPR000242 GO:0004725|GO:0006470
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3564 31 329 Protein tyrosine phosphatase (PTP) family AT1G71860 69.565 3.95e-164 459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3564 - - gmx:548044 521.931
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3564 1 47367167 47372584 Mtr1g3564 1 47367167 47372584 ECH