Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3557 ATGGGTTCCTCGAATCTTTGCTTCTTTTTCTTCTCTTTGGTGAGTTTGTTTGCTATGGCGGCTGCTAAGGTTGTGTTGATTGGGAACAACATCACTCTCTCGTTTGATGATATTGAAGCTAATTTCGCTCCATCGGTCAAAGGTTCTGGAGAATATGGAGCCTTATTCTTGGCAGAGCCGCTTGATGCATGTACAGAACTTACGAATAAAGCTAGAACTCTTTCAAATGCTAGTTCACCTTTTGTTTTGATGGTTAGAGGGGGGTGTAGCTTTGAGGACAAGGTTAGGATTGCACAAAGTGCTGGCTACAAAGCTGCAATTGTCTACGACAGTGAAGATGGTGGCATCCTGGTTGCAATGGCAGGAAATTCTGCTGGTGTAAGTATACATGCGGTATTTGTTTCAAAAGCTTCGGGTGAAATACTAAAGAAATACACTGGTTTAATTAATGTGGAAACATGGCTCATTCCAACTTTTGAAAACTCAGCATGGTCTATCATGGCAATTTCGTTCATTTCCCTGCTAGCTATGTCTGCAGTGCTGGCCACTTGTTTCTTCGTCCGCAGGCATCGTATACGAAGAGAAAGGCCTCGAACTTCTTCTCATGTTCGTGAATTTCATGGCATGAGTAGTCGCTTAGTGAAAGCAATGCCAAGTTTGATTTTTACTTCTGCTTTGGAAGATAACTGTACATCAAGAACATGTGCCATCTGCCTTGAAGATTATTGCGCTGGAGAGAAACTCAGGATTCTGCCCTGCTGTCACAAGTTTCATGCTGCCTGTGTGGATTCTTGGCTTACTTCGTGGAGAACCTTTTGCCCAGTTTGCAAGCGTGATGCAAGAACGGGTCTGGCTGATCCACCACCTTCAGAATCGACACCTCTGCTGTCATCAACCCCGTCATCTGCAGCATCCTCTTTCGTGTCTTCTATGAGGTCATCATTTGCTTCATCTTCAGCAATACAAATTGGTTCACCGTCGCAATCTGTTTCTCGTAACCACTCTTTAGTAAGTACCCCTTACAATCAGCCATCTCTAAGGTCCTACCGTCAATCCCCCTCCCTAAGCTTCAGCCGTAGCTCCGTGGATCTTAGAAACGCATCTCAAAGATCTCTAGCTTCACACATGAATTCACCGCGTTCCATCGGTTATCCATCTTTATCATCTCTTAACTCAAGGTACTTGCCTTCACACATTCCAAGTCCAAGCAATGCTTCAGTAAGTTTCCTCGGTTCATCCAGTCATCAGCAGCATCCACTTCGATATAGTGAGTCAGCCTCAAGCTTCTCACCATTTGCGTCTGCCAACTCCCTTCCGGAATGTTGA 1326 0.4472 MGSSNLCFFFFSLVSLFAMAAAKVVLIGNNITLSFDDIEANFAPSVKGSGEYGALFLAEPLDACTELTNKARTLSNASSPFVLMVRGGCSFEDKVRIAQSAGYKAAIVYDSEDGGILVAMAGNSAGVSIHAVFVSKASGEILKKYTGLINVETWLIPTFENSAWSIMAISFISLLAMSAVLATCFFVRRHRIRRERPRTSSHVREFHGMSSRLVKAMPSLIFTSALEDNCTSRTCAICLEDYCAGEKLRILPCCHKFHAACVDSWLTSWRTFCPVCKRDARTGLADPPPSESTPLLSSTPSSAASSFVSSMRSSFASSSAIQIGSPSQSVSRNHSLVSTPYNQPSLRSYRQSPSLSFSRSSVDLRNASQRSLASHMNSPRSIGYPSLSSLNSRYLPSHIPSPSNASVSFLGSSSHQQHPLRYSESASSFSPFASANSLPEC* 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3557 441 MobiDBLite consensus disorder prediction 325 353 - -
Mtr1g3557 441 ProSiteProfiles Zinc finger RING-type profile. 235 277 IPR001841 -
Mtr1g3557 441 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 195 282 IPR013083 -
Mtr1g3557 441 MobiDBLite consensus disorder prediction 420 441 - -
Mtr1g3557 441 Pfam PA domain 76 142 IPR003137 -
Mtr1g3557 441 CDD PA_C_RZF_like 20 163 IPR044744 -
Mtr1g3557 441 Pfam Ring finger domain 234 277 IPR001841 -
Mtr1g3557 441 SUPERFAMILY RING/U-box 224 288 - -
Mtr1g3557 441 Gene3D - 17 153 - -
Mtr1g3557 441 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 1 375 - -
Mtr1g3557 441 SUPERFAMILY PA domain 80 144 IPR046450 -
Mtr1g3557 441 PANTHER PROTEASE-ASSOCIATED (PA) RING/U-BOX ZINC FINGER PROTEIN 1 375 - -
Mtr1g3557 441 SMART ring_2 235 276 IPR001841 -
Mtr1g3557 441 CDD mRING-H2-C3H2C2D_ZSWM2 234 277 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3557 17 440 C3H Transcription Factor Family AT1G22670 47.018 3.57e-113 337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3557 K15692 - gmx:100791248 642.499