Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3553 ATGCCAACAACAAAAGAAGCATTTGGTGGTGTAGAATCTCCAAACGTAGACTCTTCCAACACTCATACCCCTCCCAAACATAGCTCCCGAGAATCATGTGACCTTCCTACTTTACTCTCTTCTTCTTACCCAATCACTCTTAAGTTCATGGACGTGGGATACCGAATTAAGATAGAGAACAAATCAGCAAAAGGAGGGTGCATCAAGAAACTATTTACACCACTCGAATCATCACCGTCAGATCAAAGATCAACACAAGAGCGAATCATTCTTAACAACGTAACAGGAATAGCTTACCCAGGAGAGATCCTAGCCATCCTAGGCCCATCTGGTAGCGGAAAATCAACGCTCCTAAACTCACTAGCTGGAAGACTTCATACACACAACCTCACCGGAACAATTCTCGCTAACTCATCAAAACTAGACCGAACCATTCTCCGTCGAACCGGGTTCGTTACACAAGATGATATCTTATACCCTCATTTGACTGTTCGGGAAACGTTAGTCTTCTGCTCCATGCTTCGTCTCCCAAGACAACTTACTCGGGAAACGAAGGTGGCAGCAGCAGAGTCCGCGATCGCGGAACTAGGTTTAACAAAGTGTGAAAATACTATCATTGGAAACAGTTTCATCCGCGGTGTCTCCGGTGGAGAAAGGAAGCGCGTGAGTATAGCTCATGAGATGTTGGTGGATCCAGCTCTGTTGATACTAGATGAGCCAACATCTGGACTGGACTCGACGGCTGCGCACCGACTAGTCTCAACGTTGGGATCGTTGGCAAGGAAGGGGAAGACGGTGGTGACGTCGGTGCATCAGCCGTCGAGTCGTGTGTTCCAGATGTTTGATAGAGTGCTTGTGTTGTCGGAGGGAAATTGTATGTATTATGGGAAAGGAGCAGAAGCTATGAGATATTTTGAGTCGGTTGGATTCGCGCCGTCGTTTCCGGTTAATCCGGCGGATTTTATGCTTGATCTTGCTAACGGTGTTTGCCATGTAGATGGTGTAGGTGAAAAAGATAGACCAAACATAAAGCAAAATCTAATTAATTCATACAACACAGTACTTGGTCCAAAGGTAAAATCTCTTTGCATGGACACAACCAATGCTTCAACCAAAGACAATCATCACCCTTCAAGAACCAGCTCTTCAAAAGAACGTAGATATAATGACAGAGTTAACATCTTTGATTGGTTTTACCAATTCAGTATTCTTCTCCAAAGAAGTCTCAAAGAAAGAAAATATGAATCTTTCAACACACTAAGAGTTTTTCAAGTTGTTGCTGCTGCTTTACTAGCTGGTTTAATGTGGTGGCATTCAGATTATAAGAACGTTCAAGATAGGCTTGGATTACTCTTCTTCATTTCAATCTTTTGGGGTGTATTCCCATCTTTCAACTCTGTCTTCGCGTTCCCTCAAGAACGTGCAATCTTTGTTAAAGAAAGAGCTTCTGGCATGTACACATTATCATCCTATTTCATGGCTAGAATTGTTGGTGACCTACCAATGGAGCTTCTTCTTCCAACAATTTTCCTCGTCATTACATATTGGATGGGTGGATTGAAGCCTGATTTGTTGTCTTTTCTCTTGACATTGTTGGTTGTTCTCGGATTCGTGCTTGTGTCGCAGGGTCTTGGACTTGCATTAGGTGCTGCAATAATGGATGCTAAACAAGCTTCCACAGTTGCAGCAGTGACAATGCTAGCATTTGTTTTAACAGGTGGATACTATGTCCATAAGGTGCCATCTTGTGTGGCATGGATCAAATATATATCCACAACATTCTATAGTTACAGGTTGTTAACTAGAATTCAATATGGCGATGGCAAGAAAATTGCGAATCTAATCGGTTGCAATCATGTTGGTAGTACTAGTGATGGTGCAAATTGCAAATTTCTTGATGAAGATGTGGTGGGTCAAATTGGCACAATGGGATGCATCGGTGTGTTGTTTTTCATGTTTGTGTTTTACAGATTATTGGCTTATCTTGCCTTGAGACGTATCAAGAGTTGA 2010 0.4259 MPTTKEAFGGVESPNVDSSNTHTPPKHSSRESCDLPTLLSSSYPITLKFMDVGYRIKIENKSAKGGCIKKLFTPLESSPSDQRSTQERIILNNVTGIAYPGEILAILGPSGSGKSTLLNSLAGRLHTHNLTGTILANSSKLDRTILRRTGFVTQDDILYPHLTVRETLVFCSMLRLPRQLTRETKVAAAESAIAELGLTKCENTIIGNSFIRGVSGGERKRVSIAHEMLVDPALLILDEPTSGLDSTAAHRLVSTLGSLARKGKTVVTSVHQPSSRVFQMFDRVLVLSEGNCMYYGKGAEAMRYFESVGFAPSFPVNPADFMLDLANGVCHVDGVGEKDRPNIKQNLINSYNTVLGPKVKSLCMDTTNASTKDNHHPSRTSSSKERRYNDRVNIFDWFYQFSILLQRSLKERKYESFNTLRVFQVVAAALLAGLMWWHSDYKNVQDRLGLLFFISIFWGVFPSFNSVFAFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELLLPTIFLVITYWMGGLKPDLLSFLLTLLVVLGFVLVSQGLGLALGAAIMDAKQASTVAAVTMLAFVLTGGYYVHKVPSCVAWIKYISTTFYSYRLLTRIQYGDGKKIANLIGCNHVGSTSDGANCKFLDEDVVGQIGTMGCIGVLFFMFVFYRLLAYLALRRIKS* 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3553 669 Pfam ABC-2 type transporter 271 378 IPR043926 GO:0140359
Mtr1g3553 669 PANTHER ABC TRANSPORTER G FAMILY MEMBER 25 18 667 - -
Mtr1g3553 669 SMART AAA_5 100 291 IPR003593 -
Mtr1g3553 669 Pfam ABC transporter 91 242 IPR003439 GO:0005524
Mtr1g3553 669 Pfam ABC-2 type transporter 399 604 IPR013525 GO:0016020|GO:0140359
Mtr1g3553 669 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 18 667 - -
Mtr1g3553 669 MobiDBLite consensus disorder prediction 1 34 - -
Mtr1g3553 669 Gene3D - 82 308 IPR027417 -
Mtr1g3553 669 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 86 307 IPR027417 -
Mtr1g3553 669 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 47 314 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3553 Mtr-Chr1 47173284 47180665 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3553 71 300 Calmodulin-binding Proteins AT2G36910 27.799 1.79e-15 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3553 K05681 - gmx:100812367 1037.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3553 1 47173284 47180665 Mtr1g3553 1 47173284 47180665 ECH