Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3548 ATGACATCAAATCAAATTACTGAGAGATCACCATCAATGGATATGGAATCATGTGTACCTCCAGGGTTTAGATTTCATCCAACAGAAGAAGAACTTGTAGGGTATTACCTCAACAGGAAGATTAACTCACTGAAAATTGATCTAGATGTTATTGTTGAAGTTGATCTCTACAAAATTGAACCATGGGACATACAAGATAGATGCAAGCTAGGATATGAGCAACAGAATGAGTGGTACTTTTTCAGCCACAAAGATAAGAAGTATCCTACAGGAACAAGAACTAATAGAGCCACTGCTGCTGGATTCTGGAAAGCTACTGGAAGAGATAAAGCTGTGACTTCCAAAAACAGAATAATAGGAATGAGGAAGACACTTGTCTTTTACAAGGGACGTGCCCCAAATGGAAGGAAAACTGATTGGATCATGCATGAATATAGACATCAAACCTCTGAACATGGTCCTCCACAGGAAGAAGGATGGGTTGTGTGCAGGGCATTTAAAAAGCCAAGTCCAAGTCACAGGCCAGGTTATGAACCATGGTATAGTAATCAACAACAACCACAGTATTTCAGAGATGATCAAAACTATGCAACAACAAGACCTTTATCAATTACAGATATTTTGCATGAAAATCGTTTACTCCTTCAAAATCCTGCAGCTGAAGGTACAAGTTTTAGTCACCCCTTTAGCAATGATCAACAGTTTCTATCAAACCAAAATACTCTTGTTATGGACAACAAACAACTCATTGAACTTCCACAGTTAGATAGTCCAACAACAAGTTTTGCAATCAAAGAAAATACTCATCACAATGGACTCACAATTGAAGAATATTGCAGTGAAGAAAGGAGCAATAATATTAATAATAACAATGGACAAGTAATTGATTGGAAAAGCTTGGACAATTTGTTCACTTCAACAAATCAATTTACAGATACAGCTAATTACTTTTCAAATCAAAATAGCATGCCATTGATGATACCTCATAGTCAACATGAGCTACAATCTCATCAAAATCAAGCTAATCATATCTTAGGTTGCTTTCCTGATTCATAA 1056 0.3636 MTSNQITERSPSMDMESCVPPGFRFHPTEEELVGYYLNRKINSLKIDLDVIVEVDLYKIEPWDIQDRCKLGYEQQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAVTSKNRIIGMRKTLVFYKGRAPNGRKTDWIMHEYRHQTSEHGPPQEEGWVVCRAFKKPSPSHRPGYEPWYSNQQQPQYFRDDQNYATTRPLSITDILHENRLLLQNPAAEGTSFSHPFSNDQQFLSNQNTLVMDNKQLIELPQLDSPTTSFAIKENTHHNGLTIEEYCSEERSNNINNNNGQVIDWKSLDNLFTSTNQFTDTANYFSNQNSMPLMIPHSQHELQSHQNQANHILGCFPDS* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3548 351 Gene3D NAC domain 28 171 IPR036093 GO:0003677|GO:0006355
Mtr1g3548 351 SUPERFAMILY NAC domain 12 168 IPR036093 GO:0003677|GO:0006355
Mtr1g3548 351 ProSiteProfiles NAC domain profile. 19 168 IPR003441 GO:0003677|GO:0006355
Mtr1g3548 351 Pfam No apical meristem (NAM) protein 20 146 IPR003441 GO:0003677|GO:0006355
Mtr1g3548 351 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 17 323 - -
Mtr1g3548 351 PANTHER NAC DOMAIN-CONTAINING PROTEIN 30 17 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3548 Mtr-Chr1 47092398 47095346 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3548 15 351 NAC Transcription Factor Family AT1G71930 53.079 2.01e-117 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Mtr1g3548 NAM 6.3e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3548 - - gmx:100811057 509.605